View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21358_low_7 (Length: 312)
Name: NF21358_low_7
Description: NF21358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21358_low_7 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 65549 - 65633
Alignment:
| Q |
6 |
gaatattcagatgatcaacttcaaaaaccttagcacaaatttgatgaatatagtttaccaaaataagtaattgaagaatccctcaa |
91 |
Q |
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| T |
65549 |
gaatattcatatgatcaacttcaaaaaccttagcacatatttgacgagtgtattttaccataa-aagtaattaaagcatccctcaa |
65633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 66044 - 66154
Alignment:
| Q |
149 |
agattatggctcacatcagtgtcataaaaaatttgtgtctttggtcaaagacacttataagaaagacttcctaaccaggtcgactgtgaggattccctat |
248 |
Q |
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| T |
66044 |
agattatggctcacatcagtgcta-aaaaaagttgtgtat--ggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctat |
66140 |
T |
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| Q |
249 |
gaacattccttgac |
262 |
Q |
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| T |
66141 |
ggacattccttgac |
66154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 27421814 - 27421730
Alignment:
| Q |
6 |
gaatattcagatgatcaacttcaaaaaccttagcacaaatttgatgaatatagtttaccaaaataagtaattgaagaatccctcaa |
91 |
Q |
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| T |
27421814 |
gaatattcatatgatcaacttcaaaaaccttagcacatatttgacgagtgtattttaccataa-aagtaattaaagcatccctcaa |
27421730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 26651754 - 26651796
Alignment:
| Q |
7 |
aatattcagatgatcaacttcaaaaaccttagcacaaatttga |
49 |
Q |
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| T |
26651754 |
aatattcagatgatcaacttcaaaaaccttggcacatatttga |
26651796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 26757722 - 26757764
Alignment:
| Q |
7 |
aatattcagatgatcaacttcaaaaaccttagcacaaatttga |
49 |
Q |
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| T |
26757722 |
aatattcagatgatcaacttcaaaaaccttggcacatatttga |
26757764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 262
Target Start/End: Complemental strand, 27421319 - 27421209
Alignment:
| Q |
149 |
agattatggctcacatcagtgtcataaaaaatttgtgtctttggtcaaagacacttataagaaagacttcctaaccaggtcgactgtgaggattccctat |
248 |
Q |
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| T |
27421319 |
agattatggctcacatcagtgcta-aaaaaagttgtgtat--ggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctat |
27421223 |
T |
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| Q |
249 |
gaacattccttgac |
262 |
Q |
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| T |
27421222 |
ggacattccttgac |
27421209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 31394623 - 31394732
Alignment:
| Q |
103 |
gttgcgaaatttgtgttttcacaatgaattattgac---aacagcgtagagatt----atggctcacatcagtgtcataaaaaatttgtgtctttggtca |
195 |
Q |
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|||| |||||||| |||| |||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||| |||| | | |
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| T |
31394623 |
gttgtgaaatttgcattttgacaatgaattattgacgatgacagtgtagagattatgcatggctcacatcattgtcataaaaaatttgtgtgtttgctta |
31394722 |
T |
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| Q |
196 |
aagacactta |
205 |
Q |
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| T |
31394723 |
gagacactta |
31394732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 26652138 - 26652197
Alignment:
| Q |
202 |
cttataagaaagacttcctaaccaggtcgactgtgaggattccctatgaacattccttga |
261 |
Q |
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| T |
26652138 |
cttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttga |
26652197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 26758106 - 26758165
Alignment:
| Q |
202 |
cttataagaaagacttcctaaccaggtcgactgtgaggattccctatgaacattccttga |
261 |
Q |
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| T |
26758106 |
cttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttga |
26758165 |
T |
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