View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_13 (Length: 455)
Name: NF21359_high_13
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 36673306 - 36672993
Alignment:
| Q |
18 |
aaggaagggacaaaatagctctgttaataattctgacagattaaggggattagaatatgctacttcaattactatagacgaaattgttgagttttaaata |
117 |
Q |
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| T |
36673306 |
aaggaagggacaaaatagctctgttaataattctgacagattaaggggattagaatatgctacttcaattactatagacgaaattgttgagttt-aaata |
36673208 |
T |
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| Q |
118 |
ataagatcaggtgtacacatccataggttttgttatatcggagnnnnnnntaatgttacgactctctgtatcattgtaataaaaagttgtattgctctcc |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673207 |
ataagatcaggtgtacgcatccataggttttgttatatcggagaaaaaaataatgttacgactctctgtatcattgtaataaaaagttgtattgctctcc |
36673108 |
T |
|
| Q |
218 |
tgaaaataataaaaagttgaacagctatgcctatcagtgtgttattgctcaaatatatgtataatatatctcccccacatgtattaagaaaatgaaccta |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36673107 |
tgaaaa-aataaaaagttgaacagctatgcctatcagtgtgttattgctcaaatatatgtataatatatctccccaacatgtattaagaaaatgaaccta |
36673009 |
T |
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| Q |
318 |
aactctcctcattcca |
333 |
Q |
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|||||||||||||||| |
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| T |
36673008 |
aactctcctcattcca |
36672993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 36676060 - 36675954
Alignment:
| Q |
19 |
aggaagggacaaaatagctctgttaataattctgacagattaaggggattagaatatgctacttcaattactatagacgaaattgttgagttttaaataa |
118 |
Q |
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|||||||||| |||| | |||| | || ||||||||| |||||||||||||||||||||| |||| ||| |||| ||||||||||| ||||||||||||| |
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| T |
36676060 |
aggaagggaccaaatggttctggtgatgattctgacacattaaggggattagaatatgcttcttctattcctatggacgaaattgtcgagttttaaataa |
36675961 |
T |
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| Q |
119 |
taagatc |
125 |
Q |
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| ||||| |
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| T |
36675960 |
ttagatc |
36675954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 36675867 - 36675810
Alignment:
| Q |
257 |
tgttattgctcaaatatatgtataatatatctcccccacatgtattaagaaaatgaac |
314 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||| |||||| ||| ||||| |
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| T |
36675867 |
tgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaattgaac |
36675810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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