View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21359_high_17 (Length: 423)

Name: NF21359_high_17
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21359_high_17
NF21359_high_17
[»] chr1 (5 HSPs)
chr1 (203-411)||(12228036-12228244)
chr1 (203-304)||(35167642-35167742)
chr1 (74-133)||(12228314-12228373)
chr1 (74-133)||(35167510-35167569)
chr1 (10-53)||(12228393-12228436)
[»] chr4 (2 HSPs)
chr4 (203-411)||(45099660-45099862)
chr4 (10-133)||(45099932-45100055)
[»] chr8 (1 HSPs)
chr8 (208-318)||(17904430-17904542)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 203 - 411
Target Start/End: Complemental strand, 12228244 - 12228036
Alignment:
Q  203 tggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaatgtgaagca 302  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12228244 tggactgaatatgcatgcatggtggtaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaatgtgaagca 12228145  T
Q  303 ctaatactaacttctatacgatgcaattactattttattcagttgttttgaatattaagttcaaacgggtttttgattatactattgcattggaccaacg 402  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||    
T  12228144 ctaatactaacttcaatacaatgcaattactattttattcagttgttttgaatattatgttcaaacgggtttttaattatactattgcattggaccggcg 12228045  T
Q  403 tcaaatttg 411  Q
    |||||||||    
T  12228044 tcaaatttg 12228036  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 35167642 - 35167742
Alignment:
Q  203 tggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaatgtgaagca 302  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35167642 tggagtgaatatgcatgcatggtggcaaaatgaactacctgatatgttt-ctccacattgtgcatttcgtttccttccttttcgttggaaatgtgaagca 35167740  T
Q  303 ct 304  Q
    ||    
T  35167741 ct 35167742  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 12228373 - 12228314
Alignment:
Q  74 ttaacacataatttcatctatgaattatctacataaaatttgaacaaaaacattgaaaac 133  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12228373 ttaacacgtaatttcatctatgaattatctacataaaatttgaacaaaaacattgaaaac 12228314  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 35167510 - 35167569
Alignment:
Q  74 ttaacacataatttcatctatgaattatctacataaaatttgaacaaaaacattgaaaac 133  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35167510 ttaacacataatttcatctatgaattatctacacaaaatttgaacgaaaacattgaaaac 35167569  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 12228436 - 12228393
Alignment:
Q  10 aatatcaccgttataagctccaatttaccataaacagagccact 53  Q
    ||||||||||||||| |||||||||||| |||||||||||||||    
T  12228436 aatatcaccgttataggctccaatttacaataaacagagccact 12228393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 203 - 411
Target Start/End: Complemental strand, 45099862 - 45099660
Alignment:
Q  203 tggactgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaatgtgaagca 302  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  45099862 tggactgaatatgcatgcatggtggcaaaatgacatacctcatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaaa------ca 45099769  T
Q  303 ctaatactaacttctatacgatgcaattactattttattcagttgttttgaatattaagttcaaacgggtttttgattatactattgcattggaccaacg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099768 ctaatactaacttctatacgatgcaattactattttattcagttgttttgaatattaagttcaaacgggtttttgattatactattgcattggaccaacg 45099669  T
Q  403 tcaaatttg 411  Q
    |||||||||    
T  45099668 tcaaatttg 45099660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 45100055 - 45099932
Alignment:
Q  10 aatatcaccgttataagctccaatttaccataaacagagccactnnnnnnnnnnnnnnnnnnnnttaacacataatttcatctatgaattatctacataa 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||                    |||||||  |||||||||||||||||||||||||||    
T  45100055 aatatcaccgttataggctccaatttaccataaacagagccactaaaaaaggaaaaaagaaaaattaacacgcaatttcatctatgaattatctacataa 45099956  T
Q  110 aatttgaacaaaaacattgaaaac 133  Q
    ||||||||||||||||||||||||    
T  45099955 aatttgaacaaaaacattgaaaac 45099932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 17904430 - 17904542
Alignment:
Q  208 tgaatatgcatgcatggtggcaaaatgacatacctgatatgttttcttcacattgtgcctttcgtttccttccttttctttggaaat---gtgaagcact 304  Q
    ||||||||||| |||||| |||||||||  ||||  | |||||| || |||||| ||||||||  ||||||||||||||||||  ||   ||||| ||||    
T  17904430 tgaatatgcatacatggttgcaaaatgaactaccacaaatgttt-ctccacattttgcctttcacttccttccttttctttggctatgtggtgaaacact 17904528  T
Q  305 aatactaacttcta 318  Q
    |||| |||||||||    
T  17904529 aatattaacttcta 17904542  T

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