View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_2 (Length: 704)
Name: NF21359_high_2
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 21 - 697
Target Start/End: Original strand, 24460837 - 24461500
Alignment:
| Q |
21 |
agagttcaaaaatggaactaacatgtcaagaacggagatgtatttgagagtagaataaaaggattcgggatcgtcacggttgaaggaagagttgacagag |
120 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| || |
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| T |
24460837 |
agagttgaaaaatggaactaacatgtcaagaacggagatgtatttgagagtagaataaacggattcgggatcatcacggttgaaggaagagtcgacatag |
24460936 |
T |
|
| Q |
121 |
gcgatgatacgagcaaaggaatctctttcaccggcggttttagccgccaccggtggcggcaaccatgcattgtagagatgcattttttaatcaaaagagt |
220 |
Q |
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| T |
24460937 |
gcgatgatacgagcaaaggaatctctttcgccggcagtttgagctgccaccggtggcggcaaccatgcattgtagagatgcattttttaatcaaaagagt |
24461036 |
T |
|
| Q |
221 |
ggttagatatagggacggaggaggtaattaatttttgattttgttcttgttactatgatgagaccgtcattagattcacaaggttaattgcttccaacca |
320 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24461037 |
ggttagatatagggacagaggaggtaattaattgttgattttgttcttgttactatgatgaggccgtcattagattcacaaggttaattgcttccaacca |
24461136 |
T |
|
| Q |
321 |
ttttaacactctccattagcaaggtgatgtaaaatctaatctcatcttgctcatttcattaccacaatatttttgagttatgaaatcaagcaatgattat |
420 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
24461137 |
ttttaacactctccattagcaaggtgatgtaaaatctaatctcatcttgctcatttcattaccacaacattttttagttatgaaatcaagcaatgattat |
24461236 |
T |
|
| Q |
421 |
gtatttatactctttggacaaatgtcaccctataaataattcatatg----tgatgcacaagaaagcgaagaacaggttattgtgcctcttaaacccatt |
516 |
Q |
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| T |
24461237 |
gtatttatactctttggacaaatgtcaccctataaataattcatatgtcaatgatgcacaagaaagcgaagaac-ggttattgtgcctctttaac----- |
24461330 |
T |
|
| Q |
517 |
attagccatgccatgtattgtggcaaatagtttgaattactctcaacgaaaactcgagaatgacctggcatattttannnnnnnnaagggaacgtggcat |
616 |
Q |
| |
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| T |
24461331 |
----------cgatgtattgtggcaaatagttcgaattactc-caacgaaaactcaagaatgatctggcatatgtttttttttttaagggaacgtcgcat |
24461419 |
T |
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| Q |
617 |
atagttcgaattacaagctgaagtcggatttcccttaccaactgaaaattcttcgttctcctctttcatctccttcatctc |
697 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24461420 |
atagttcgaattacaagctgaagtcggatttcccttaccaactgaaaattcttcgttctcctctttcatctccttcttctc |
24461500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 24479000 - 24479187
Alignment:
| Q |
21 |
agagttcaaaaatggaactaacatgtcaagaacggagatgtatttgagagtagaataaaaggattcgggatcgtcacggttgaaggaagagttgacagag |
120 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |
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| T |
24479000 |
agagttgaaaaatggaactaacaggtcaagaacggagatgtatttgagagtagaataaacggattcgggatcgtcacggttgaaggaagagttgacggcg |
24479099 |
T |
|
| Q |
121 |
gcgatgatacgagcaaaggaatctctttcaccggcggttttagccgccaccggtggcggcaaccatgcattgtagagatgcatttttt |
208 |
Q |
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| T |
24479100 |
gcgatgatgcgagcaaaggaatctctttcaccggcggtttgagccgccaccggtggcggcaaccatgcattgtagagatgcatttttt |
24479187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 272 - 365
Target Start/End: Original strand, 24479494 - 24479585
Alignment:
| Q |
272 |
actatgatgagaccgtcattagattcacaaggttaattgcttccaaccattttaacactctccattagcaaggtgatgtaaaatctaatctcat |
365 |
Q |
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|||||||||| ||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
24479494 |
actatgatgaagccgccattagattca--agggtaattgcttccaactattttaacactctccattagcaaggtgaagcaaaatataatctcat |
24479585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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