View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_21 (Length: 383)
Name: NF21359_high_21
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 41679739 - 41680095
Alignment:
| Q |
17 |
gttaaaacttctcatctaacaatagactaccaagaaatgttggtttccctataatcacttgatagaaaattttctctccaagattggtgacctaggttta |
116 |
Q |
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| T |
41679739 |
gttaaaacttctcatctaacaatagactaccaagaaatgttggtttccctataatcacttgatagaaaattttctctccaagattggtgacctaggttta |
41679838 |
T |
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| Q |
117 |
ctttaacacaccagnnnnnnnnnnnngactatcaagaaaggatgaaatgaacgatggattgcgaaataacctgaaattccaacggctatgccttcaaaaa |
216 |
Q |
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|||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41679839 |
ctttaacacaccagaaaaaagaaaaagactacaaagaaaggatgaaataaacgatggattgcgaaataacctgaaattccaacggctatgccttcaaaaa |
41679938 |
T |
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| Q |
217 |
ccgaatgaaaacaaagtgcaagaataagcaaaatagtatctcccacattagtagtcttcataaatgcaacgttgctctcatccatcgccaactcggtcgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41679939 |
ccgaatgaaaacaaagtgcaagaataagcaaaatagtatctcccacattagtagtcttcatgaatgcaacgttgctctcatccatcgccaactcggtcgt |
41680038 |
T |
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| Q |
317 |
tccctcttcttcttgaggtgttcttcctccttcaagttcctcaactttagcttccct |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41680039 |
tccctcttcttcttgaggtgttcttcctccttcaagttcctcaactttagcttccct |
41680095 |
T |
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