View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21359_high_23 (Length: 367)
Name: NF21359_high_23
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 55372802 - 55372683
Alignment:
| Q |
151 |
aaaggttcgcatttatttacttacaaacctcaaatgatttatatttccttgattgcacatgattaattctctctctagtatcttttattgccgaaaaatc |
250 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| ||||| | | |||||||||||||||||| |||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
55372802 |
aaaggttcacatttattcatttacaaacctcacatgatctctcattccttgattgcacatgactaatcctctctctggtatcttttattgccg--aaatc |
55372705 |
T |
|
| Q |
251 |
aatggccatatccttcttcatc |
272 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
55372704 |
agtggccatatccttcttcatc |
55372683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 55373686 - 55373567
Alignment:
| Q |
151 |
aaaggttcgcatttatttacttacaaacctcaaatgatttatatttccttgattgcacatgattaattctctctctagtatcttttattgccgaaaaatc |
250 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| ||||| | | |||||||||||||||||| |||| | |||||| |||||||||||||||| ||||| |
|
|
| T |
55373686 |
aaaggttcacatttattcatttacaaacctcacatgatctctcattccttgattgcacatgactaatcccctctctggtatcttttattgccg--aaatc |
55373589 |
T |
|
| Q |
251 |
aatggccatatccttcttcatc |
272 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
55373588 |
agtggccatatccttcttcatc |
55373567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 17451728 - 17451668
Alignment:
| Q |
14 |
tgaatgctggctaagggaaacaaaagatccaccaagcgattagattaaggataatcaatcg |
74 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17451728 |
tgaatgctggcgaagggaaacaaaagatccaccaagcgattagattaaggataatcaatcg |
17451668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 27363749 - 27363634
Alignment:
| Q |
155 |
gttcgcatttatttacttacaaacctcaaatgatttatatttccttgattgcacatgattaattctctctctagtatcttttattgccgaaaaatcaatg |
254 |
Q |
| |
|
|||| |||||||| | |||||||||||| ||||| | | ||||||||||| |||||| |||| |||||||| |||||||||||||||| |||||| || |
|
|
| T |
27363749 |
gttcacatttattcatttacaaacctcacatgatctctcgttccttgattgtacatgactaatcctctctctggtatcttttattgccg--aaatcagtg |
27363652 |
T |
|
| Q |
255 |
gccatatccttcttcatc |
272 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27363651 |
gccatatccttcttcatc |
27363634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 42758930 - 42758892
Alignment:
| Q |
40 |
atccaccaagcgattagattaaggataatcaatcgacaa |
78 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42758930 |
atccaccaagcgattagattaagggtaatcaatcgacaa |
42758892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 272
Target Start/End: Complemental strand, 30932775 - 30932657
Alignment:
| Q |
152 |
aaggttcgcatttatttacttacaaacctcaaatgatttatatttccttgattgcacatgattaattctctctctagtatcttttattgccgaaaaatca |
251 |
Q |
| |
|
||||||| |||||||| | |||||||||||| ||||| | | ||||||||||| |||||| |||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
30932775 |
aaggttcacatttattcatttacaaacctcacatgatctctcgttccttgattgtacatgactaatcctctctctggtatcttttattgccg--aaatct |
30932678 |
T |
|
| Q |
252 |
atggccatatccttcttcatc |
272 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
30932677 |
gtggccatatccttcttcatc |
30932657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 7668554 - 7668666
Alignment:
| Q |
151 |
aaaggttcgcatttatttacttacaaacctcaaatgatttatatttccttgattgcacatgattaattctctctctagtatcttttattgccgaaaaatc |
250 |
Q |
| |
|
|||||||| |||||||| | ||||||| |||| ||||| | | ||||||||||| |||| | |||| |||||||| |||||||||||||| | ||||| |
|
|
| T |
7668554 |
aaaggttcacatttattcatttacaaatctcacatgatctctcgttccttgattgtacataactaatcctctctctggtatcttttattgctg--aaatc |
7668651 |
T |
|
| Q |
251 |
aatggccatatcctt |
265 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
7668652 |
agtggccatatcctt |
7668666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University