View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_37 (Length: 297)
Name: NF21359_high_37
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 10542937 - 10543209
Alignment:
| Q |
11 |
atcatcagacaattaagaaaatgacttaaattaaaagatcaaggcaaccctataaattaaaatgaggttttagttgagaaagtccaattttggagctccc |
110 |
Q |
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| T |
10542937 |
atcataagacaattaagacaatgacttaaattaaaagatcaaggcaacattataaattaaaatgaggttttagttgagaaagtccaattttggagctccc |
10543036 |
T |
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| Q |
111 |
ttcactccaatacaaaaagatcaaggcaaccctatctccaaattcatgcaaacccatgactttggcaagtttccaatgtgcaaagtcaaaggtaaccatg |
210 |
Q |
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| T |
10543037 |
ttcactccaatacaaaaagatcaaggcaaccctatctccaaattcatgcaaacccatgactttggtaagtttccaatgtgcaaagtcaaaggtaaccatg |
10543136 |
T |
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| Q |
211 |
aacaagcagcaagggtaaactatcacctccttttagacttggagtgcggagagccccaaattaggtttatatt |
283 |
Q |
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| T |
10543137 |
aacaagcagcaagggtaaactatcacctccttttagacttggagtgcggagagccccaaattaggtttatatt |
10543209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 10541797 - 10541860
Alignment:
| Q |
101 |
tggagctcccttcactccaatacaaaaagatcaaggcaaccctatctccaaattcatgcaaacc |
164 |
Q |
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| T |
10541797 |
tggagctcccttcaatccaatacgaaaagatcaaggtattctcatctcccaattcatgcaaacc |
10541860 |
T |
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