View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_38 (Length: 289)
Name: NF21359_high_38
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_38 |
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| [»] scaffold0331 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 53929203 - 53929274
Alignment:
| Q |
209 |
gtttaaagtggacccctaatttaattagttttatctccactaactgctatctatttttattcacaggttctg |
280 |
Q |
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| T |
53929203 |
gtttaaagtggacccctaatttaattagtttgatctccactaactgctatctatttttatttacaggttctg |
53929274 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 53929011 - 53929115
Alignment:
| Q |
84 |
cacattgcactgttttcctcttgtctactgtttactaagcacaacctt-gtatctgagtgggtttttctccatctttgatctaattctaaatcttagcag |
182 |
Q |
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| T |
53929011 |
cacattgcactgttttcctcttgtcgaaggtttactaagcacatccttggtgtctaagtgggtttttatccctctttcatttacttctaaatcttagcag |
53929110 |
T |
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| Q |
183 |
tatag |
187 |
Q |
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||||| |
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| T |
53929111 |
tatag |
53929115 |
T |
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Target: scaffold0331 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0331
Description:
Target: scaffold0331; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 1083 - 1140
Alignment:
| Q |
21 |
aactctattaattcatcactagtttggattttatagatcatttagcacacattaacta |
78 |
Q |
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| T |
1083 |
aactctagtaagtcatcactagtttggattctatagatcatttatcacagattaacta |
1140 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 7403214 - 7403157
Alignment:
| Q |
21 |
aactctattaattcatcactagtttggattttatagatcatttagcacacattaacta |
78 |
Q |
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| T |
7403214 |
aactctagtaagtcatcactagtttggattctatagatcatttatcacagattaacta |
7403157 |
T |
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