View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21359_high_4 (Length: 639)

Name: NF21359_high_4
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21359_high_4
NF21359_high_4
[»] chr4 (15 HSPs)
chr4 (262-623)||(25515037-25515398)
chr4 (262-623)||(28069777-28070137)
chr4 (471-623)||(25538270-25538422)
chr4 (262-454)||(50065828-50066018)
chr4 (353-488)||(25538441-25538576)
chr4 (268-455)||(50518178-50518364)
chr4 (492-602)||(23443632-23443743)
chr4 (409-623)||(16490811-16491026)
chr4 (495-582)||(17239165-17239253)
chr4 (531-623)||(23622003-23622097)
chr4 (268-437)||(28257305-28257471)
chr4 (441-515)||(21679676-21679747)
chr4 (339-436)||(11481309-11481405)
chr4 (404-455)||(20885595-20885646)
chr4 (404-455)||(33309958-33310009)
[»] chr1 (12 HSPs)
chr1 (262-623)||(35755599-35755960)
chr1 (263-622)||(23550475-23550841)
chr1 (504-623)||(25881123-25881244)
chr1 (274-434)||(5382601-5382761)
chr1 (409-458)||(25881023-25881072)
chr1 (404-455)||(14273161-14273212)
chr1 (404-455)||(14284567-14284618)
chr1 (404-455)||(21632642-21632693)
chr1 (404-446)||(16768984-16769026)
chr1 (533-602)||(28313756-28313826)
chr1 (409-458)||(28315020-28315069)
chr1 (276-328)||(26907713-26907765)
[»] chr3 (16 HSPs)
chr3 (262-622)||(36433619-36433978)
chr3 (262-623)||(46279877-46280241)
chr3 (346-622)||(37919705-37919982)
chr3 (452-622)||(37919344-37919514)
chr3 (409-623)||(17531024-17531240)
chr3 (409-623)||(17535963-17536179)
chr3 (408-623)||(54623335-54623551)
chr3 (263-390)||(9308497-9308624)
chr3 (274-408)||(7786503-7786637)
chr3 (409-623)||(32876836-32877051)
chr3 (268-456)||(13953238-13953425)
chr3 (409-481)||(48977817-48977890)
chr3 (409-481)||(48987357-48987430)
chr3 (268-434)||(13329464-13329627)
chr3 (268-426)||(23485024-23485182)
chr3 (404-455)||(46306720-46306771)
[»] chr8 (11 HSPs)
chr8 (287-623)||(988045-988381)
chr8 (262-623)||(7836805-7837166)
chr8 (262-623)||(7807382-7807742)
chr8 (263-437)||(9418268-9418442)
chr8 (290-457)||(24097209-24097376)
chr8 (268-437)||(12766299-12766468)
chr8 (268-453)||(24268730-24268914)
chr8 (268-437)||(31576427-31576595)
chr8 (268-459)||(42713702-42713891)
chr8 (274-457)||(20028820-20028998)
chr8 (395-457)||(20036697-20036759)
[»] chr2 (13 HSPs)
chr2 (11-222)||(10158134-10158345)
chr2 (299-418)||(14272152-14272271)
chr2 (269-437)||(29910490-29910658)
chr2 (304-430)||(18577830-18577956)
chr2 (409-481)||(1790146-1790219)
chr2 (409-481)||(1799640-1799713)
chr2 (409-481)||(22631396-22631469)
chr2 (268-459)||(35876107-35876293)
chr2 (268-459)||(35883596-35883782)
chr2 (268-459)||(36723309-36723495)
chr2 (412-545)||(27421503-27421634)
chr2 (404-455)||(3394736-3394787)
chr2 (404-455)||(3395888-3395939)
[»] chr5 (19 HSPs)
chr5 (470-623)||(2641438-2641590)
chr5 (262-457)||(11222306-11222501)
chr5 (262-457)||(42733561-42733756)
chr5 (353-437)||(26651730-26651814)
chr5 (353-437)||(26923315-26923399)
chr5 (409-481)||(1694724-1694797)
chr5 (409-481)||(5599723-5599796)
chr5 (409-481)||(5609369-5609442)
chr5 (409-481)||(31151605-31151678)
chr5 (409-476)||(17554754-17554822)
chr5 (262-358)||(26649621-26649717)
chr5 (262-358)||(26921206-26921302)
chr5 (262-335)||(26649469-26649542)
chr5 (262-335)||(26921054-26921127)
chr5 (404-455)||(20034982-20035033)
chr5 (404-455)||(33956643-33956694)
chr5 (409-455)||(20833428-20833474)
chr5 (262-307)||(2641349-2641394)
chr5 (388-420)||(2641405-2641437)
[»] scaffold0021 (1 HSPs)
scaffold0021 (409-623)||(176474-176688)
[»] chr7 (11 HSPs)
chr7 (268-457)||(9735884-9736073)
chr7 (262-457)||(4314157-4314352)
chr7 (268-421)||(32816982-32817136)
chr7 (268-457)||(2890717-2890905)
chr7 (268-437)||(48712627-48712797)
chr7 (409-473)||(14774751-14774816)
chr7 (409-473)||(15225204-15225269)
chr7 (404-455)||(14635886-14635937)
chr7 (404-455)||(14645586-14645637)
chr7 (404-455)||(15948518-15948569)
chr7 (404-455)||(33293308-33293359)
[»] scaffold0247 (2 HSPs)
scaffold0247 (504-623)||(23717-23838)
scaffold0247 (409-458)||(23617-23666)
[»] scaffold0091 (1 HSPs)
scaffold0091 (263-387)||(15719-15843)
[»] scaffold0771 (1 HSPs)
scaffold0771 (268-456)||(5378-5565)
[»] chr6 (7 HSPs)
chr6 (322-437)||(14099910-14100026)
chr6 (268-377)||(17513686-17513795)
chr6 (404-455)||(22064607-22064658)
chr6 (404-455)||(22065295-22065346)
chr6 (409-455)||(23883500-23883546)
chr6 (268-388)||(2850508-2850628)
chr6 (262-318)||(14097735-14097791)
[»] scaffold0281 (1 HSPs)
scaffold0281 (409-481)||(23202-23275)
[»] scaffold0773 (1 HSPs)
scaffold0773 (404-455)||(1891-1942)
[»] scaffold0206 (1 HSPs)
scaffold0206 (274-457)||(750-928)
[»] scaffold0101 (1 HSPs)
scaffold0101 (436-513)||(42953-43027)
[»] scaffold0920 (1 HSPs)
scaffold0920 (409-455)||(1816-1862)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 262 - 623
Target Start/End: Original strand, 25515037 - 25515398
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  25515037 gatttggagaacagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacat 25515136  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  25515137 cctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgttattgtt 25515236  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaag 561  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  25515237 aaagagaagaacattctaagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacatagatgaactttgtggtacaaatccaag 25515336  T
Q  562 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25515337 aacaaaatattccctatgtctcaccaaaagaagatactttgatatatgacataaatgaaaag 25515398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 262 - 623
Target Start/End: Original strand, 28069777 - 28070137
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| |||||||| ||| ||||||||||||||||| ||||||| || ||| ||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  28069777 gatttggagaacagtaattaatcaaagaaattttgactttgagagaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacat 28069876  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    |||||||||||||||||||  ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28069877 cctcatttgatgttttaaacgata-cgaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgttcttgtt 28069975  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaag 561  Q
    ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||    
T  28069976 aaagagaagaacattctaagattacaagtgaagttgaaaacgtctttatcaaagcaaataagcaaaatgacataaatgaactttgtgatacaaattcaag 28070075  T
Q  562 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    ||| |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  28070076 aactaaatattccctatgcctcgccaaaagaagatactttgatatatgacataaatggaaag 28070137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 471 - 623
Target Start/End: Complemental strand, 25538422 - 25538270
Alignment:
Q  471 aacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaacaaaata 570  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25538422 aacattctaagattacaggtgaagttgaaaacatccttatcaaagaaaataagcaaaaggacataaatgaactttgtggtacaaatccaagaacaaaata 25538323  T
Q  571 ttctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538322 ttctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 25538270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 262 - 454
Target Start/End: Complemental strand, 50066018 - 50065828
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||| ||||||||| |||||| ||||||||||||||||    
T  50066018 gatttggagaacagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaa-tatcattttggtcatacaaaatgaagaaaacat 50065920  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgt 454  Q
    ||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50065919 cctaatttgatgttttaaaatataacaaaa-tattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgt 50065828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 353 - 488
Target Start/End: Complemental strand, 25538576 - 25538441
Alignment:
Q  353 agaaaacatcctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaat 452  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  25538576 agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgataaatgtttcatgagaat 25538477  T
Q  453 gttcttgttaaagagaagaacattataagattacaa 488  Q
    ||||||||||||||||| |||||| |||||||||||    
T  25538476 gttcttgttaaagagaataacattctaagattacaa 25538441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 268 - 455
Target Start/End: Complemental strand, 50518364 - 50518178
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| |||||||||||||| ||||||| ||||||||| || ||  |||||||  ||| || | |||||| |||||| |||||||||| ||||||||||     
T  50518364 gagaatagaaatcaatcaaataaatttttattttgagagaggttcctcatgttcttacgaagaacattttggtcatacaaaatgaagagaacatcctcac 50518265  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||||||||| ||| |||||| | || |||||  |||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  50518264 ttgatgtttttaaagataacacatat-ttacatgtattatcttgttatctactaatgtattttgtgagaaatgtttcatgagaatgtt 50518178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 492 - 602
Target Start/End: Complemental strand, 23443743 - 23443632
Alignment:
Q  492 aagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaa 590  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||  |||||| ||||||||||||||||||| |||| ||    
T  23443743 aagttaaaaacgtccttatcaaagcaaataagcaaaaggacataaatggactttttggtacaaaatcaagaagcaaaatattctctatgtcttaccagaa 23443644  T
Q  591 gaagatactttg 602  Q
    ||||||||||||    
T  23443643 gaagatactttg 23443632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 409 - 623
Target Start/End: Complemental strand, 16491026 - 16490811
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatcctt 508  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||   ||| |||||||  || |  | | |  ||  ||||| ||||| || ||    
T  16491026 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttcttaacaaa-agaagaaggttctttgctcaatagacaagttaaaaacgtcatt 16490928  T
Q  509 atcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gatat 606  Q
    ||||||||||||||| |||||||||||||||  ||||  || |||||| |||||| ||||| | |||||||||||||||||||||| ||||||| ||  |    
T  16490927 atcaaagcaaataagtaaaaggacataaatgggctttttggaacaaattcaagaagcaaaaaaatctctatgtctcaccaaaagaatatactttggactt 16490828  T
Q  607 atgacataaatggaaag 623  Q
    |||||| ||||||||||    
T  16490827 atgacacaaatggaaag 16490811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 495 - 582
Target Start/End: Original strand, 17239165 - 17239253
Alignment:
Q  495 ttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtct 582  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||  |||||| |||||||||||||||||||    
T  17239165 ttgaaaacgtccttatcaaagcaaataagcaaaaggacataaatggactttttggtacaaaatcaagaagcaaaatattctctatgtct 17239253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 531 - 623
Target Start/End: Original strand, 23622003 - 23622097
Alignment:
Q  531 acataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gatatatgacataaatggaaag 623  Q
    ||||||||| |||||  || |||||| |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23622003 acataaatggactttttggaacaaattcaagaagcaaaatattctatatgtctcaccaaaagaagatactttggatatatgacataaatggaaag 23622097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 437
Target Start/End: Complemental strand, 28257471 - 28257305
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||||| |  || |||  ||| ||||||| ||||||| | |||| | || ||| ||| ||| || |||||||||      
T  28257471 gagaatagaaatcaatcaaaggaattttgact--gaaaaaagtttctcatgttcctacaaagaacattatggttatacaaagtgaggagaacatcctctc 28257374  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    ||||||||| ||  | |||||||  ||||||| ||||||| |||||||||||||  ||||||||||||||    
T  28257373 ttgatgtttcaatga-taacaaacgtattacaattattatcttgttatctactaacgtgttttgtgagaa 28257305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 21679747 - 21679676
Alignment:
Q  441 tttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaag 515  Q
    ||||||||||||||| |||||||||||||||||||| |||  |||||||| ||   ||||||||||| |||||||    
T  21679747 tttcatgagaatgtttttgttaaagagaagaacattttaatcttacaagtaaa---gaaaacatcctcatcaaag 21679676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 436
Target Start/End: Original strand, 11481309 - 11481405
Alignment:
Q  339 gtcatataaaatgaagaaaacatcctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgaga 436  Q
    |||||| ||| |||||| |||||||||| ||||| |||| ||| |||||| | || ||||| ||||||| ||||||||||||| ||  ||||||||||    
T  11481309 gtcatacaaactgaagagaacatcctcacttgatttttttaaagataacacatat-ttacatttattatcttgttatctactaatgatttttgtgaga 11481405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 20885646 - 20885595
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  20885646 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 20885595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 33310009 - 33309958
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  33310009 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 33309958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 262 - 623
Target Start/End: Complemental strand, 35755960 - 35755599
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  35755960 gatttggagaacataaatcaatcaaagaaattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacat 35755861  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  35755860 cctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctacgagtgtgttttgtgagaaatgtttcatgagaatgttcttgtt 35755761  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaag 561  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  35755760 aaagagaagaacattctaagattacaagtgaagttgaaaacgtccttatcaaaacaaataagcaaaaggacataaatgaactttgtggtacaaatccaag 35755661  T
Q  562 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35755660 aacaaaatattccctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 35755599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 263 - 622
Target Start/End: Original strand, 23550475 - 23550841
Alignment:
Q  263 atttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatc 362  Q
    |||| |||||||||||||||||||||||||||| | |||||||||| ||| ||||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  23550475 atttggagaacagaaatcaatcaaagaaattttaactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaaggaaacatc 23550574  T
Q  363 ctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgag-------aatgtt 455  Q
    ||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||    
T  23550575 ctcatttgatgttttaaaagataacaaaaatattaagattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaattgagaatgtt 23550674  T
Q  456 cttgttaaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaa 555  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23550675 cttgttaaagagaagaacattctaagattacaagtgaagttgaaaacgtccttatcaaagcaaataagcaaaaggacataaatgaactttgtggtacaaa 23550774  T
Q  556 tccaagaacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaa 622  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23550775 tccaagaacaaaatattccctatgtctcaccaaaagaagataatttgatatatgacataaatggaaa 23550841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 504 - 623
Target Start/End: Original strand, 25881123 - 25881244
Alignment:
Q  504 tccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt- 601  Q
    |||||||||||| ||||||||||||||||||||||| |||||  || |||||| |||||| ||||||||||||||||||||||||||||||||||||||     
T  25881123 tccttatcaaaggaaataagcaaaaggacataaatggactttttggaacaaattcaagaagcaaaatattctctatgtctcaccaaaagaagatactttg 25881222  T
Q  602 gatatatgacataaatggaaag 623  Q
    ||||||||||||||||||||||    
T  25881223 gatatatgacataaatggaaag 25881244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 274 - 434
Target Start/End: Complemental strand, 5382761 - 5382601
Alignment:
Q  274 agaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatg 373  Q
    ||||||||||||||| |||| |||||||||||||| ||| ||| ||| ||| |||||||||| | | |||| |||   |||||||||||| |||| ||||    
T  5382761 agaaatcaatcaaaggaattgtgattttgagaaaggtttctcacgttcctaaaaatatcattatggacatacaaagacaagaaaacatccccattggatg 5382662  T
Q  374 ttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtga 434  Q
    ||||||||  |||||||||||||||  |||| || ||||||| ||||| ||  ||||||||    
T  5382661 ttttaaaatgtaacaaaaatattacgattatcatcttgttatttactaatgatttttgtga 5382601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 25881023 - 25881072
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttctt 458  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||    
T  25881023 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttctt 25881072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 14273212 - 14273161
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  14273212 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14273161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 14284618 - 14284567
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  14284618 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14284567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 21632642 - 21632693
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| | | ||||||||||||| |||||||||||||||    
T  21632642 ttatattgttatctactaatttattttgtgagaaatgtttcatgagaatgtt 21632693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 16769026 - 16768984
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcat 446  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||    
T  16769026 ttatcttgttatctactaatgtgttttgtgagaaatgtttcat 16768984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 533 - 602
Target Start/End: Complemental strand, 28313826 - 28313756
Alignment:
Q  533 ataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatactttg 602  Q
    ||||||| |||||  ||||||||  |||||| ||||||||||||| | |||||||||||||| ||||||||    
T  28313826 ataaatggactttttggtacaaaatcaagaagcaaaatattctctctatctcaccaaaagaatatactttg 28313756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 28315069 - 28315020
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttctt 458  Q
    |||||||||| || ||  ||||||||||||| ||||||||||||||||||    
T  28315069 ttgttatctattaatgaattttgtgagaaatgtttcatgagaatgttctt 28315020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 26907765 - 26907713
Alignment:
Q  276 aaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaa 328  Q
    ||||||||||||| |||||||| |||||||||  ||| ||||||| |||||||    
T  26907765 aaatcaatcaaaggaattttgactttgagaaatgtttctcatgttcctacaaa 26907713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 262 - 622
Target Start/End: Complemental strand, 36433978 - 36433619
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||| ||||||||| |||||| ||||||||||||||||    
T  36433978 gatttggagaacagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaattatcattttggtcatacaaaatgaagaaaacat 36433879  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  36433878 cctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctacaagtgtgttttgtgagaaatgtttcatgagaatgttcttgtt 36433779  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaag 561  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  36433778 aaagagaagaacattctaagattacaagtgaagttgaaaacgtccttatcaaagcaaataagcaaaaggacataaatgaactttttggtacaaatccaag 36433679  T
Q  562 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaa 622  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  36433678 aacaaaatattccctatgtctcaccaaaagaagatactttg-tatatgacataaatggaaa 36433619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 262 - 623
Target Start/End: Complemental strand, 46280241 - 46279877
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||||| ||||||||||||| |||||||| |||||||||  ||| ||||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  46280241 gatttggagaacaaaaatcaatcaaaggaattttgactttgagaaaagtttctcatgttcctacaaatatcattttggtcatacaaagtgaagaaaacat 46280142  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    | | |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46280141 cataatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgttcttgtt 46280042  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatcc--- 558  Q
    || |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |       
T  46280041 aaggagaagaacattctaagattacaagtgaagttgaaaacgtccttatcaaatcaaataagcaaaaggacataaatgaactttgtggtacaaattcaaa 46279942  T
Q  559 aagaacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  46279941 aagaacaaaatattctctatgtctccccaaaagaatatactttgatatatgacataaatggaaag 46279877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 346 - 622
Target Start/End: Original strand, 37919705 - 37919982
Alignment:
Q  346 aaaatgaagaaaacatcctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca 445  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  37919705 aaaatgaagaacacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctattagtgtgttttgtgagaaatgtttca 37919804  T
Q  446 tgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaacttt 545  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37919805 tgagaatgtttttgttaaagaaaagaacattctaagattacaagtgaagttgaaaacgtccttatcaaagcaaataagcaaaaggacataaatgaacttt 37919904  T
Q  546 gcggtacaaatccaagaac-aaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaa 622  Q
    | ||||||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37919905 gtggtacaaattcaagaacaaaaatattccctatgtatcaccaaaagaagatactttgatatatgacataaatggaaa 37919982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 452 - 622
Target Start/End: Original strand, 37919344 - 37919514
Alignment:
Q  452 tgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggta 551  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||  |||||||||||||||| ||||    
T  37919344 tgttcttgttaaagagaagaacattctaagattacaagtgaagttgaaaacgtccctatcaaagcaaataagaaaaataacataaatgaactttgtggta 37919443  T
Q  552 caaatccaagaacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaa 622  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  37919444 caaatccaagaacaaaatattctcaatgtctcaccaaaagaagatactttgatatatggcataaatggaaa 37919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 409 - 623
Target Start/End: Complemental strand, 17531240 - 17531024
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaaca-tcct 507  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||   | | |||||||  || |  | | |||||  |||||||||| | || |    
T  17531240 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttcttaacata-agaagaaggttctttgctcacaagacaagttgaaaaaagtctt 17531142  T
Q  508 tatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gata 605  Q
    |||||||||||||||||||||||||||||||| |||||  || |||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  17531141 tatcaaagcaaataagcaaaaggacataaatggactttttggaacaaattcaagaaacaaaatattctctatgtctcaccaaaagaaaatactttggata 17531042  T
Q  606 tatgacataaatggaaag 623  Q
    ||||||||||||||||||    
T  17531041 tatgacataaatggaaag 17531024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 409 - 623
Target Start/End: Complemental strand, 17536179 - 17535963
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaaca-tcct 507  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||   | | |||||||  || |  | | |||||  |||||||||| | || |    
T  17536179 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttcttaacata-agaagaaggttctttgctcacaagacaagttgaaaaaagtctt 17536081  T
Q  508 tatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gata 605  Q
    |||||||||||||||||||||||||||||||| |||||  || |||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  17536080 tatcaaagcaaataagcaaaaggacataaatggactttttggaacaaattcaagaaacaaaatattctctatgtctcaccaaaagaaaatactttggata 17535981  T
Q  606 tatgacataaatggaaag 623  Q
    ||||||||||||||||||    
T  17535980 tatgacataaatggaaag 17535963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 408 - 623
Target Start/End: Original strand, 54623335 - 54623551
Alignment:
Q  408 tttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatcct 507  Q
    |||||||||||||| ||  ||||||||||||| ||||||||||||||||||   | | |||||||  || |  | | ||||   ||||| ||||| ||||    
T  54623335 tttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttcttaacaca-agaagaaggttctttgctcacaaaacaagttaaaaacgtcct 54623433  T
Q  508 tatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gata 605  Q
    |||||||| ||||||||||||||||||||||| |||||  || | |||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  54623434 tatcaaagaaaataagcaaaaggacataaatggactttttggaagaaattcaagaagcaaaatattctctatgtctcaccaaaagaagatactttggata 54623533  T
Q  606 tatgacataaatggaaag 623  Q
    ||||||||||||||||||    
T  54623534 tatgacataaatggaaag 54623551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 263 - 390
Target Start/End: Original strand, 9308497 - 9308624
Alignment:
Q  263 atttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatc 362  Q
    |||| ||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| ||||| |||||||||| |||||| |||||||||||||||||    
T  9308497 atttggagaagagaaatcaatcaaaggaattttgactttgagaaaggtttttcatgttcctacatatatcattttggtcatacaaaatgaagaaaacatc 9308596  T
Q  363 ctcatttgatgttttaaaaaataacaaa 390  Q
    ||||||| ||||||||||| ||||||||    
T  9308597 ctcatttaatgttttaaaagataacaaa 9308624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 7786637 - 7786503
Alignment:
Q  274 agaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatg 373  Q
    ||||||||||||||| |||||||| |||||||||| ||| | ||||| |||||||||||||| | |||||| ||| ||||||||| ||| ||||||||||    
T  7786637 agaaatcaatcaaaggaattttgactttgagaaaggtttcttatgttcctacaaatatcattctggtcatacaaagtgaagaaaatatcatcatttgatg 7786538  T
Q  374 ttttaaaaaataacaaaaatattacagttattatt 408  Q
    |||||||| ||||||||||||||||| ||||||||    
T  7786537 ttttaaaagataacaaaaatattacaattattatt 7786503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 409 - 623
Target Start/End: Original strand, 32876836 - 32877051
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatcctt 508  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||   | | |||||||  || |  | | |||||  ||||| ||||| |||||    
T  32876836 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttcttaacata-agaagaatgttctttgttcacaagacaagttaaaaacgtcctt 32876934  T
Q  509 atcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gatat 606  Q
    |||||||||||||||||||| |||||||||| | ||   || |||||| |||||| |||||||||||||||||||||||||||||| ||| ||| ||  |    
T  32876935 atcaaagcaaataagcaaaatgacataaatggatttgttggaacaaattcaagaagcaaaatattctctatgtctcaccaaaagaatatattttggactt 32877034  T
Q  607 atgacataaatggaaag 623  Q
    |||||||||||| ||||    
T  32877035 atgacataaatgaaaag 32877051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 268 - 456
Target Start/End: Complemental strand, 13953425 - 13953238
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||  |||||| | |||||||||| ||| |||||||  |||||| | |||| | || ||| ||| |||||| |||||| |||     
T  13953425 gagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggttatacaaagtgaagagaacatcttcac 13953326  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttc 456  Q
    |||||||||| ||| ||||||   || ||||| ||||||| | ||||||||||| ||  ||||||||||||| ||||||||||||||||    
T  13953325 ttgatgtttttaaagataacacttat-ttacatttattatctcgttatctactaatgaattttgtgagaaatgtttcatgagaatgttc 13953238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 48977817 - 48977890
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  48977817 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 48977890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 48987357 - 48987430
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  48987357 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 48987430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 434
Target Start/End: Complemental strand, 13329627 - 13329464
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||| | |||||||||   || |||||||  |||||| | |||| | |||||| ||| |||||| ||||||||||     
T  13329627 gagaatagaaatcaatcaaaggaatttttactttgagaaaagattctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcac 13329528  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtga 434  Q
    || |||||||    | ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||    
T  13329527 tttatgtttt--ttattaacacatat-ttacatttattatcttgttatctactaatgtgttttgtga 13329464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 268 - 426
Target Start/End: Original strand, 23485024 - 23485182
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaat-atcattttagtcatataaaatgaagaaaacatcctca 366  Q
    ||||| |||||||||| |||| |||||| | |||||||||| ||| |||||||  ||||||  | |||| | |||||| ||| |||||| |||| | |||    
T  23485024 gagaatagaaatcaataaaaggaatttttactttgagaaaggtttctcatgttcttacaaaagaacattatggtcataaaaagtgaagagaacaccttca 23485123  T
Q  367 tttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtg 426  Q
     || ||||||| ||| |||||| | || ||||| ||||||| ||||||||||||| ||||    
T  23485124 ctttatgtttttaaagataacacatat-ttacatttattatcttgttatctactaatgtg 23485182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 46306771 - 46306720
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  46306771 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 46306720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 287 - 623
Target Start/End: Original strand, 988045 - 988381
Alignment:
Q  287 agaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatgttttaaaaaataa 386  Q
    ||||||||||| |||||||||| ||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  988045 agaaattttgactttgagaaaggtttctcatgttcctacaaatatcattttggtcatacaaaatgaagaaaacatcctcatttgatgttttaaaagataa 988144  T
Q  387 caaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattac 486  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  988145 caaaaatattacaattattattttgttatctactagtgtgttttgtgagaaatgtttcatgagaatgttcttgttaaagagaagaacattctaagattac 988244  T
Q  487 aagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaacaaaatattctctatgtctcacc 586  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |    
T  988245 aagtgaagttgaaaacgtccttatcaaagcaaataagcaaaaggacataaatgaactttgtggtgcaaatccaagaacaaaatattccctatgtctcatc 988344  T
Q  587 aaaagaagatactttgatatatgacataaatggaaag 623  Q
    |||||||||||||||||||||||||||||||||||||    
T  988345 aaaagaagatactttgatatatgacataaatggaaag 988381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 262 - 623
Target Start/End: Original strand, 7836805 - 7837166
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| |||||||  |||||||||||| |||||||| |||||||||| ||| ||||||| | |||||||||||||| |||||| ||| ||||||| ||||    
T  7836805 gatttggagaacaacaatcaatcaaaggaattttgactttgagaaaggtttctcatgttccaacaaatatcattttggtcatacaaagtgaagaagacat 7836904  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  7836905 cctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactggtgtgttttgtgagaaatgtttcatgagaatgttcttgtt 7837004  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaag 561  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7837005 aaagagaagaacattctaagattacaactgaagttgaaaacatctttatcaaagcaaataagcaaaaggacataaatgaactttgtggtacaaattcaag 7837104  T
Q  562 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  7837105 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacaaaaatgaaaag 7837166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 262 - 623
Target Start/End: Original strand, 7807382 - 7807742
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| |||||||  |||||||||||| |||||||| |||||||||| ||| ||||||| | |||||||||||||| |||||| ||| ||||||| ||||    
T  7807382 gatttggagaacaacaatcaatcaaaggaattttgactttgagaaaggtttctcatgttccaacaaatatcattttggtcatacaaagtgaagaagacat 7807481  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgtt 461  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  7807482 cctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatctactagtgtgttttgtga-aaatgtttcatgagaatgttcttgtt 7807580  T
Q  462 aaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaag 561  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  7807581 aaagagaagaacattctaagattacaactgaagttgaaaacgtccttatcaaagcaaataaacaaaaggacataaatgaactttgtggtacaaattcaag 7807680  T
Q  562 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  7807681 aacaaaatattctctatgtctcaccaaaagaagatactttgatatatgacaaaaatgaaaag 7807742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 9418268 - 9418442
Alignment:
Q  263 atttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatc 362  Q
    |||| ||||| ||||||||||||||| |||||||| ||| |||||| ||||||||||| |||||||||||||| |  ||||||||| |||||||||||||    
T  9418268 atttggagaatagaaatcaatcaaaggaattttgactttaagaaaggtttatcatgttcctacaaatatcattctgctcatataaagtgaagaaaacatc 9418367  T
Q  363 ctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||   || ||| |||||||||||    
T  9418368 ctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccggtaatgtattttgtgagaa 9418442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 290 - 457
Target Start/End: Complemental strand, 24097376 - 24097209
Alignment:
Q  290 aattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatgttttaaaaaataacaa 389  Q
    |||||||| |||||||||  | | ||||||| |||||||||| | | | |||||||| | |||||||||||||||||||||||||||||||| |||||||    
T  24097376 aattttgactttgagaaaagtctttcatgttcctacaaatattaatctggtcatatagagtgaagaaaacatcctcatttgatgttttaaaagataacaa 24097277  T
Q  390 aaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    |||||||||| |||||||||||||||| |||| |||||||||| || ||| ||||| ||||||||||||    
T  24097276 aaatattacaattattattttgttatccactaatgtgttttgtaag-aatgtttcagtgagaatgttct 24097209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 268 - 437
Target Start/End: Original strand, 12766299 - 12766468
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaat-atcattttagtcatataaaatgaagaaaacatcctca 366  Q
    ||||| |||||||||| |||| |||||| | |||||||||| ||| |||||||  ||||||  | |||||  |||||| ||| |||||| ||||||||||    
T  12766299 gagaatagaaatcaataaaaggaatttttactttgagaaaggtttctcatgttcttacaaaagaacatttcggtcataaaaagtgaagagaacatcctca 12766398  T
Q  367 tttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
     || ||||||||||| |||||| | || ||||| ||||||| ||||||||||||| |||||||||||||||    
T  12766399 ctttatgttttaaaagataacacatat-ttacatttattatcttgttatctactaatgtgttttgtgagaa 12766468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 24268730 - 24268914
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||  |||||| | ||||||| || ||| |||| |   |||||| | |||| | |||| | ||| |||||| ||||||||||     
T  24268730 gagaatagaaatcaatcaaacgaatttttactttgagagaggtttctcatatccttacaaagaacattctggtcagacaaagtgaagagaacatcctcac 24268829  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatg 453  Q
    |||||||||| ||| |||||| | || ||||| ||||||| ||||||||||||| |||||||||||| |||| |||||||||||||    
T  24268830 ttgatgtttttaaagataacacatat-ttacatttattatcttgttatctactaatgtgttttgtgataaatgtttcatgagaatg 24268914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 268 - 437
Target Start/End: Complemental strand, 31576595 - 31576427
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||  |||||| | ||||||| || ||| |||| ||  |||||| | |||| | |||||| ||| |||||| ||||||||||     
T  31576595 gagaatagaaatcaatcaaatgaatttttactttgagagaggtttctcatattcttacaaagaacattctggtcatacaaagtgaagagaacatcctcac 31576496  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    |||||||||| ||| |||||| | || ||||| ||||||| ||||||||||||| |||||||||||||||    
T  31576495 ttgatgtttttaaagataacacatat-ttacatttattatcttgttatctactaatgtgttttgtgagaa 31576427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 459
Target Start/End: Complemental strand, 42713891 - 42713702
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||| | |||||||||  ||| |||||||  |||||| | |||  | |||||  ||| |||||| ||||||||||     
T  42713891 gagaatagaaatcaatcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacatactggtcattcaaagtgaagagaacatcctcac 42713792  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttcttg 459  Q
    || |||||||      ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||    
T  42713791 tttatgttttttttt-taacacatat-ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttcttg 42713702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 20028820 - 20028998
Alignment:
Q  274 agaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatg 373  Q
    ||||||||||||||| |||||| |  ||||||||  ||| |||||||  || ||| | |||| | |||||| ||| |||||| |||||||||| || |||    
T  20028820 agaaatcaatcaaaggaatttttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatg 20028919  T
Q  374 ttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    ||||      ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||    
T  20028920 tttttt----taacacatat-ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttct 20028998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 20036697 - 20036759
Alignment:
Q  395 ttacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||    
T  20036697 ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttct 20036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 8e-75; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 10158134 - 10158345
Alignment:
Q  11 atgttaatgttctcctccttcattgtgtctgattacatgcacgacaacnnnnnnnnnnnactcctttcttcacaatctcatcccttcccgtcaaattgca 110  Q
    ||||||||||||| ||||||| ||||||| |||| |||||||||||||            |||||||||||||||||||||||||||| |||||||||||    
T  10158134 atgttaatgttctactccttctttgtgtcggattccatgcacgacaactttttttttttcctcctttcttcacaatctcatcccttccagtcaaattgca 10158233  T
Q  111 aaccatatcatgttttttggaataataataaaggctgattgcttctcctcattcaaaatcaaaattaataaaagaaactattgttgagcgtctccttaaa 210  Q
    |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10158234 aaccatatcatgttttttggaataataataaaagttgattgcttatcctcattcaaaatcaaaattaataaaagaaactattgttgagcgtctccttaaa 10158333  T
Q  211 atcactagcctg 222  Q
    ||||||||||||    
T  10158334 atcactagcctg 10158345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 299 - 418
Target Start/End: Original strand, 14272152 - 14272271
Alignment:
Q  299 tttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatgttttaaaaaataacaaaaatattac 398  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14272152 tttgagaaaggtttatcatgttcctacaaatatcattttggtcatacaaagtgaagaaaacatcctcatttgatgttttaaaagataacaaaaatattac 14272251  T
Q  399 agttattattttgttatcta 418  Q
    | ||||||||||||||||||    
T  14272252 aattattattttgttatcta 14272271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 269 - 437
Target Start/End: Original strand, 29910490 - 29910658
Alignment:
Q  269 agaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatt 368  Q
    |||| |||||| ||||| || |||||||| |||||||||  ||||||||||| |||| ||||||||| | |||||| |||| |||||||| ||| |||||    
T  29910490 agaatagaaataaatcacaggaattttgactttgagaaaagtttatcatgttcctaccaatatcattctggtcatacaaaaagaagaaaatatcttcatt 29910589  T
Q  369 tgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    ||||| ||||||| |||| |||||||||||| |||||||||||||||| |||| | |||||||||||||    
T  29910590 tgatgatttaaaagataaaaaaaatattacaattattattttgttatccactaatttgttttgtgagaa 29910658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 304 - 430
Target Start/End: Original strand, 18577830 - 18577956
Alignment:
Q  304 gaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatgttttaaaaaataacaaaaatattacagtta 403  Q
    |||| |||| ||||||| |||||||||||||| |  | ||  ||| ||||||||||| |||||||||||||||||||| |||| |||||||||||| |||    
T  18577830 gaaacatttttcatgttcctacaaatatcattctgattatgcaaagtgaagaaaacaccctcatttgatgttttaaaagataagaaaaatattacaatta 18577929  T
Q  404 ttattttgttatctactagtgtgtttt 430  Q
    |||||||||||||  ||| ||||||||    
T  18577930 ttattttgttatccgctaatgtgtttt 18577956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 1790146 - 1790219
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  1790146 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 1790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 1799640 - 1799713
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  1799640 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 1799713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 22631396 - 22631469
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatg-agaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||    
T  22631396 ttgttatctactaatatgttttgtgagaaatgtttcatgaataatgttcttgttaaagagaagaacattctaag 22631469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 459
Target Start/End: Original strand, 35876107 - 35876293
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||| | |||||||||  ||| |||||||  |||||| | |||| | |||||| ||| |||||| ||||||||||     
T  35876107 gagaatagaaatcaatcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcac 35876206  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttcttg 459  Q
    || |||| ||      ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||    
T  35876207 tttatgtgtt----tttaacacatat-ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttcttg 35876293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 459
Target Start/End: Original strand, 35883596 - 35883782
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||| | |||||||||  ||| |||||||  |||||| | |||| | |||||| ||| |||||| ||||||||||     
T  35883596 gagaatagaaatcaatcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcac 35883695  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttcttg 459  Q
    || |||| ||      ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||    
T  35883696 tttatgtgtt----tttaacacatat-ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttcttg 35883782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 459
Target Start/End: Original strand, 36723309 - 36723495
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||| | |||||||||  ||| |||||||  |||||| | |||| | |||||| ||| |||||| ||||||||||     
T  36723309 gagaatagaaatcaatcaaaggaatttttactttgagaaaagtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcac 36723408  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttcttg 459  Q
    || |||| ||      ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||    
T  36723409 tttatgtgtt----tttaacacatat-ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttcttg 36723495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 545
Target Start/End: Original strand, 27421503 - 27421634
Alignment:
Q  412 ttatctactagtgtgttttgtgagaaatatttcat-gagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatccttat 510  Q
    |||||||| | ||| ||||||||||||| |||||| ||||||||||||| |||||| |||||| || |   |||| |||||||   |  |||||||| ||    
T  27421503 ttatctacaaatgtattttgtgagaaatgtttcatagagaatgttcttgctaaagataagaactttctggtattataagtgaa---gggaacatcctcat 27421599  T
Q  511 caaagcaaataagcaaaaggacataaatgaacttt 545  Q
    |||||||||  ||||||| |||||  |||||||||    
T  27421600 caaagcaaaagagcaaaaagacatttatgaacttt 27421634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 3394736 - 3394787
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  3394736 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 3394787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 3395888 - 3395939
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  3395888 ttatattgttatctactaatgaattttgtaagaaatatttcatgagaatgtt 3395939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 470 - 623
Target Start/End: Original strand, 2641438 - 2641590
Alignment:
Q  470 gaacattataagattacaagtgaagttgaaaacatccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaacaaaat 569  Q
    ||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |    
T  2641438 gaacattctaagattacaagtgaagttgaaaacgtcattatcaaagcaaataagcaaaatgacataaatgaactttgtggtacaaatccaagaac-aatt 2641536  T
Q  570 attctctatgtctcaccaaaagaagatactttgatatatgacataaatggaaag 623  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2641537 attccctatgtctcacccaaagaagatactttgatatatgacataaatggaaag 2641590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 262 - 457
Target Start/End: Original strand, 11222306 - 11222501
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||| ||||||||||||||| |||||||| ||||| |||| ||| ||||||| |||||||||||||| | |||||| ||| |||||||| |||    
T  11222306 gatttggagaatagaaatcaatcaaaggaattttgactttgaaaaaggtttctcatgttcctacaaatatcattcttgtcatacaaagtgaagaaagcat 11222405  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||| ||||||||||||| ||| ||||| ||||||||||||    
T  11222406 cctcatttgatgttttaaaagataacaaaaatattacaattattattttgttattcactaatgtgttttgtgag-aatgtttcagtgagaatgttct 11222501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 262 - 457
Target Start/End: Complemental strand, 42733756 - 42733561
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||| ||||||||||||||| |||||||| ||||| |||| |||||||| || |||||||||||||| | |||||| ||| |||||||| |||    
T  42733756 gatttggagaatagaaatcaatcaaaggaattttgactttgaaaaaggtttatcatcttcctacaaatatcattcttgtcatacaaagtgaagaaagcat 42733657  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||  |||| ||||||||||||| ||| ||||| ||||||||||||    
T  42733656 cctcatatgatgttttaaaagataacaaaaatattacaattattattttgttattcactaatgtgttttgtgag-aatgtttcagtgagaatgttct 42733561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 26651730 - 26651814
Alignment:
Q  353 agaaaacatcctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  26651730 agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtgagaa 26651814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 26923315 - 26923399
Alignment:
Q  353 agaaaacatcctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  26923315 agaaaacatcctcatttgatgttttaaaagataacaaaaatattacaattattattttgttatccactaatgtgttttgtgagaa 26923399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Complemental strand, 1694797 - 1694724
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  1694797 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 1694724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 5599723 - 5599796
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  5599723 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 5599796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 5609369 - 5609442
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  5609369 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 5609442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Complemental strand, 31151678 - 31151605
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  31151678 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 31151605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 17554822 - 17554754
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacatt 476  Q
    ||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  17554822 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacatt 17554754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 26649621 - 26649717
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaa 358  Q
    ||||| ||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||||||||||| | || ||| ||| |||||||||    
T  26649621 gatttggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcattctggttatacaaagtgaagaaaa 26649717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 26921206 - 26921302
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaa 358  Q
    ||||| ||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||||||||||| | || ||| ||| |||||||||    
T  26921206 gatttggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcattctggttatacaaagtgaagaaaa 26921302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 26649469 - 26649542
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcatt 335  Q
    ||||| ||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| ||||||||||||||    
T  26649469 gatttggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcatt 26649542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 26921054 - 26921127
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcatt 335  Q
    ||||| ||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| ||||||||||||||    
T  26921054 gatttggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcatt 26921127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 20034982 - 20035033
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  20034982 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 20035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 33956694 - 33956643
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  33956694 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 33956643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 20833428 - 20833474
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  20833428 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 20833474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 2641349 - 2641394
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaa 307  Q
    ||||| |||||||||||| |||||||| |||||||| |||||||||    
T  2641349 gatttggagaacagaaataaatcaaaggaattttgactttgagaaa 2641394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 2641405 - 2641437
Alignment:
Q  388 aaaaatattacagttattattttgttatctact 420  Q
    |||||||||||| ||||||||||||||||||||    
T  2641405 aaaaatattacaattattattttgttatctact 2641437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 409 - 623
Target Start/End: Original strand, 176474 - 176688
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatcctt 508  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||   | | |||||||  || |  | | |||||  ||||| ||||| |||||    
T  176474 ttgttatctactaatatgttttgtgagaaatgtttcatgagaatgttcttaacata-agaagaaggttttttgctcacaagacaagttaaaaacgtcctt 176572  T
Q  509 atcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt-gatat 606  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| ||  |    
T  176573 atcaaagcaaataagcaaaaggacataaatggactttttggtacaaat-caagaagcaaaatattctctatgtctcaccaaaagaatatactttggactt 176671  T
Q  607 atgacataaatggaaag 623  Q
    |||||||||||||||||    
T  176672 atgacataaatggaaag 176688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 268 - 457
Target Start/End: Original strand, 9735884 - 9736073
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||  |||||||| |||||||||| ||| |||||||  ||||||||||||| |  ||||| ||| |||||||| |||||||||    
T  9735884 gagaatagaaatcaatcaaatgaattttgactttgagaaaggtttctcatgttcttacaaatatcattctcttcatacaaagtgaagaaaccatcctcat 9735983  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    |||||||||||||| | ||||||||| ||||| |||||||||||| ||  |||| ||||||||||||| ||| ||||| ||||||||||||    
T  9735984 ttgatgttttaaaagagaacaaaaattttacaattattattttgtcattcactaatgtgttttgtgag-aatgtttcagtgagaatgttct 9736073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 262 - 457
Target Start/End: Complemental strand, 4314352 - 4314157
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacat 361  Q
    ||||| ||||| ||||||||||||||  |||||| | ||| |||||| ||| |||| || |||||||||||| | | |||||  ||| ||||||||||||    
T  4314352 gatttggagaatagaaatcaatcaaaagaatttttactttcagaaaggtttctcatattcctacaaatatcactctggtcattcaaagtgaagaaaacat 4314253  T
Q  362 cctcatttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    |||||||||||||||||||| ||||||||||||| | | ||||||| |||||||  |||| ||||||||||||| ||| ||||| ||||||||||||    
T  4314252 cctcatttgatgttttaaaagataacaaaaatatcataattattatcttgttattcactaatgtgttttgtgag-aatgtttcagtgagaatgttct 4314157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 268 - 421
Target Start/End: Original strand, 32816982 - 32817136
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcatt-ttagtcatataaaatgaagaaaacatcctca 366  Q
    ||||| |||||||||||||| ||||||| | |||||||||| ||| |||||||  |||||| | |||| || |||||| ||| | || |||||||| |||    
T  32816982 gagaatagaaatcaatcaaataaatttttaatttgagaaaggtttctcatgttcttacaaagaacattcttggtcatacaaagtcaaaaaaacatcatca 32817081  T
Q  367 tttgatgttttaaaaaataacaaaaatattacagttattattttgttatctacta 421  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  32817082 tttgatgttttaaaagataacaaaaatattacaattattattttgttatccacta 32817136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 268 - 457
Target Start/End: Original strand, 2890717 - 2890905
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||  |||||| | |||||||||| ||| |||||||  |||||| | |||| | |||||| ||| |||||| ||||||||||     
T  2890717 gagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagaacatcctcac 2890816  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    || ||||||  ||| |||||| | || ||||| ||||||| ||||||||||||| |||||||||| || ||| ||||| ||||||||||||    
T  2890817 tttatgtttctaaagataacacatat-ttacatttattatcttgttatctactaatgtgttttgtaag-aatgtttcagtgagaatgttct 2890905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 268 - 437
Target Start/End: Complemental strand, 48712797 - 48712627
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| |||||| | || ||||||| ||| |||||||  |||||| | ||||    ||||| ||| |||||| |||||| |||     
T  48712797 gagaatagaaatcaatcaaaggaatttttacttagagaaaggtttctcatgttcttacaaagaacattacgatcatacaaagtgaagagaacatcttcac 48712698  T
Q  368 ttgatgttttaaaaaataacaaaaata-ttacagttattattttgttatctactagtgtgttttgtgagaa 437  Q
    |||||||||| ||| |||||||| ||| ||| | |||||||  |||||||||||| ||| |||||||||||    
T  48712697 ttgatgtttttaaagataacaaacatatttatatttattatcctgttatctactaatgtattttgtgagaa 48712627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 14774751 - 14774816
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatg-agaatgttcttgttaaagagaagaac 473  Q
    ||||||||||||| | |||||||||| |||| ||||||| | ||||||||||||||||||||||||    
T  14774751 ttgttatctactaatatgttttgtgataaatttttcatgaaaaatgttcttgttaaagagaagaac 14774816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 15225204 - 15225269
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatg-agaatgttcttgttaaagagaagaac 473  Q
    ||||||||||||| | |||||||||| |||| ||||||| | ||||||||||||||||||||||||    
T  15225204 ttgttatctactaatatgttttgtgataaatttttcatgaaaaatgttcttgttaaagagaagaac 15225269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 14635937 - 14635886
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  14635937 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14635886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 14645637 - 14645586
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  14645637 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 14645586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 15948569 - 15948518
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  15948569 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 15948518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 33293359 - 33293308
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  33293359 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 33293308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 504 - 623
Target Start/End: Original strand, 23717 - 23838
Alignment:
Q  504 tccttatcaaagcaaataagcaaaaggacataaatgaactttgcggtacaaatccaagaa-caaaatattctctatgtctcaccaaaagaagatacttt- 601  Q
    |||||||||||| ||||||||||||||||||||||| |||||  || |||||| |||||| ||||||||||||||||||||||||||||||||||||||     
T  23717 tccttatcaaaggaaataagcaaaaggacataaatggactttttggaacaaattcaagaagcaaaatattctctatgtctcaccaaaagaagatactttg 23816  T
Q  602 gatatatgacataaatggaaag 623  Q
    ||||||||||||||||||||||    
T  23817 gatatatgacataaatggaaag 23838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 23617 - 23666
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttctt 458  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||    
T  23617 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgttctt 23666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 263 - 387
Target Start/End: Complemental strand, 15843 - 15719
Alignment:
Q  263 atttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatc 362  Q
    |||| ||||| ||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||||||||||| | |||||| ||| |||||||||||||    
T  15843 atttggagaatagaaatcaatcaaaggaattttgactttgagaaaggtttctcatgttcctacaaatatcattatggtcatacaaagtgaagaaaacatc 15744  T
Q  363 ctcatttgatgttttaaaaaataac 387  Q
    || |||||||||||||||| |||||    
T  15743 cttatttgatgttttaaaagataac 15719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 268 - 456
Target Start/End: Complemental strand, 5565 - 5378
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||  |||||| | |||||||||| ||| |||||||  |||||| | |||| | || ||| ||| |||||| |||||| |||     
T  5565 gagaatagaaatcaatcaaatgaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggttatacaaagtgaagagaacatcttcac 5466  T
Q  368 ttgatgttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgttc 456  Q
    |||||||||| ||| ||||||   || ||||| ||||||| | ||||||||||| ||  ||||||||||||| ||||||||||||||||    
T  5465 ttgatgtttttaaagataacacttat-ttacatttattatctcgttatctactaatgaattttgtgagaaatgtttcatgagaatgttc 5378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 322 - 437
Target Start/End: Original strand, 14099910 - 14100026
Alignment:
Q  322 ctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatgtttt-aaaaaataacaaaaatattacagttattattttgttatctact 420  Q
    |||||||||||||| | |||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||| || ||||  |||    
T  14099910 ctacaaatatcattatggtcatacaaagtgaagaaaacatcttcatttgatgttttcaaaagataacaaaaatattacaattattatatttttattcact 14100009  T
Q  421 agtgtgttttgtgagaa 437  Q
    | ||| |||||||||||    
T  14100010 aatgtcttttgtgagaa 14100026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 268 - 377
Target Start/End: Complemental strand, 17513795 - 17513686
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| |||||||||||||||||||||| | |||||||||| ||| |||||||  |||||| | |||| | |||||| ||| ||||||  |||||||||     
T  17513795 gagaatagaaatcaatcaaagaaatttttactttgagaaaggtttctcatgttcttacaaagaacattctggtcatacaaagtgaagagtacatcctcac 17513696  T
Q  368 ttgatgtttt 377  Q
    || |||||||    
T  17513695 tttatgtttt 17513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 22064658 - 22064607
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  22064658 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 22064607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 22065295 - 22065346
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  22065295 ttatattgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 22065346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 23883500 - 23883546
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  23883500 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 23883546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 388
Target Start/End: Original strand, 2850508 - 2850628
Alignment:
Q  268 gagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcat 367  Q
    ||||| ||||||||||||||| ||| || | |||||||||| ||| ||| |||  |||||| | |||| | || ||| ||| |||||| ||||||| ||     
T  2850508 gagaatagaaatcaatcaaaggaatatttactttgagaaaggtttctcacgttcttacaaagaacattatggttatacaaagtgaagagaacatccccac 2850607  T
Q  368 ttgatgttttaaaaaataaca 388  Q
    | |||||||| ||| ||||||    
T  2850608 tcgatgtttttaaagataaca 2850628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 14097735 - 14097791
Alignment:
Q  262 gatttagagaacagaaatcaatcaaagaaattttgattttgagaaagatttatcatg 318  Q
    ||||| ||||| |||||||||||||||||||||||| |||  ||||| ||| |||||    
T  14097735 gatttggagaatagaaatcaatcaaagaaattttgactttccgaaaggtttctcatg 14097791  T

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Target: scaffold0281 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 481
Target Start/End: Original strand, 23202 - 23275
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatga-gaatgttcttgttaaagagaagaacattataag 481  Q
    ||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||    
T  23202 ttgttatctactaatatgttttgtgagaaatgtttcatgaagaatgttcttgttaaagagaagaacattctaag 23275  T

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Target: scaffold0773 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 1891 - 1942
Alignment:
Q  404 ttattttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    |||| ||||||||||||| ||  |||||||||||||||||||||||||||||    
T  1891 ttatattgttatctactaatgaattttgtgagaaatatttcatgagaatgtt 1942  T

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Target: scaffold0206 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 750 - 928
Alignment:
Q  274 agaaatcaatcaaagaaattttgattttgagaaagatttatcatgtttctacaaatatcattttagtcatataaaatgaagaaaacatcctcatttgatg 373  Q
    ||||||||||||||| |||||| |  ||||||||  ||| |||||||  || ||| | |||| | |||||| ||| |||||| |||||||||| || |||    
T  750 agaaatcaatcaaaggaatttttaccttgagaaaagtttctcatgttcttaaaaagaacattctggtcatacaaagtgaagagaacatcctcactttatg 849  T
Q  374 ttttaaaaaataacaaaaatattacagttattattttgttatctactagtgtgttttgtgagaaatatttca-tgagaatgttct 457  Q
    ||||      ||||| | || ||||| ||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||||||||    
T  850 tttttt----taacacatat-ttacatttattatcttgttatctactaatgtgttttgtgag-aatgtttcagtgagaatgttct 928  T

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Target: scaffold0101 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 436 - 513
Target Start/End: Complemental strand, 43027 - 42953
Alignment:
Q  436 aaatatttcatgagaatgttcttgttaaagagaagaacattataagattacaagtgaagttgaaaacatccttatcaa 513  Q
    |||| |||||| |||||||||||||||||||||||||||||  ||| |||||||| ||   ||||||||||| |||||    
T  43027 aaatgtttcataagaatgttcttgttaaagagaagaacattcaaagcttacaagtaaa---gaaaacatcctcatcaa 42953  T

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Target: scaffold0920 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 1816 - 1862
Alignment:
Q  409 ttgttatctactagtgtgttttgtgagaaatatttcatgagaatgtt 455  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  1816 ttgttatctactaatgaattttgtgagaaatgtttcatgagaatgtt 1862  T

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