View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_42 (Length: 258)
Name: NF21359_high_42
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45145753 - 45145994
Alignment:
| Q |
1 |
cattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctattattaatgctctttgctctaaagggcatgctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145753 |
cattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctattattaatgctctttgctctaaagggcatgctaa |
45145852 |
T |
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| Q |
101 |
gagagctgaaggtgtagcttggcatcacaaagacaagattaaaggagcgctaccttgtgtttatagaagtcttctttatggttggtctctggagaggaat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45145853 |
gagagctgaaggtgtagattggcatcacaaagacaagattaaaggagagctaccttgtgtttatagaagtcttctttatggttggtctatggagaggaat |
45145952 |
T |
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| Q |
201 |
gtaaaggaatctaggagaattattcaagagatgaagacaaat |
242 |
Q |
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| T |
45145953 |
gtgaaggaatctaggagaattattcaagagatgaagacaaat |
45145994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9795282 - 9795041
Alignment:
| Q |
1 |
cattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctattattaatgctctttgctctaaagggcatgctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9795282 |
cattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctattattaatgctctttgctctaaagggcatgctaa |
9795183 |
T |
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| Q |
101 |
gagagctgaaggtgtagcttggcatcacaaagacaagattaaaggagcgctaccttgtgtttatagaagtcttctttatggttggtctctggagaggaat |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9795182 |
gagagctgaaggtgtagtttggcatcacaaagacaagattaaaggagtgctaccttgtgtttatagaagtcttctttatggttggtctttggagaggaat |
9795083 |
T |
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| Q |
201 |
gtaaaggaatctaggagaattattcaagagatgaagacaaat |
242 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
9795082 |
gtgaaggaatcttggagaattattcaagagatgaagacaaat |
9795041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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