View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_43 (Length: 257)
Name: NF21359_high_43
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 7284231 - 7284451
Alignment:
| Q |
16 |
atgaactatgtggagtcgtgcattgttgagtctttacttgtatctatgcatgatggttagtcctatttaaagacgggtatttaaagaggggtggattaaa |
115 |
Q |
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| T |
7284231 |
atgaactatgtggagtcgtgcattgtcgagtctttacttgtatccatgcatgatggtcagtcctatttaaagacgggtatttaaagaggggtggattaaa |
7284330 |
T |
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| Q |
116 |
tcggtaatatagctccgattatccaattatttaaagaagggggaccactcggtagtgtgaatacttgctatgatttatttcacatctattttcttaatta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
7284331 |
tcggtaatatagctccgattatccaattatttaaagaagggggaccactcggtagtgtgaatatttgctatgatttatttcatatctattttcttaatta |
7284430 |
T |
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| Q |
216 |
cgactacttttttaagtgctc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
7284431 |
cgactacttttttaagtgctc |
7284451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 17396449 - 17396314
Alignment:
| Q |
16 |
atgaactatgtggagtcgtgcattgttgagtctttacttgtatctatgcatgatggttagtcctatttaaagacgggtatttaaagaggggtggattaaa |
115 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| ||| ||||||| |||||||||| | || |||||| || || |
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| T |
17396449 |
atgaactatttggagtcgtgcattgttgagtctatacttgtatccatgcatcatggtcggtcttatttaatgacgggtattagatgacgggtgggtt-aa |
17396351 |
T |
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| Q |
116 |
tcggtaatatagctccgattatccaattatttaaaga |
152 |
Q |
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| T |
17396350 |
tcggtaatatacctctgattatccaattatttaaaga |
17396314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 31002487 - 31002397
Alignment:
| Q |
74 |
agtcctatttaaagacgggtatttaaagaggggtggattaaatcggtaatatagctccgattatccaattatttaaagaagggggaccactc |
165 |
Q |
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| T |
31002487 |
agtcctatttaaagaagggtatttaaagacgggtggatt-aatcggtaatatacctcacattatccaaatatttaaagacgggggatcactc |
31002397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 31325273 - 31325348
Alignment:
| Q |
93 |
tatttaaagaggggtggattaaatcggtaatatagctccgattatccaattatttaaagaagggggaccactcggta |
169 |
Q |
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| T |
31325273 |
tatttaatgacggatggattaa-tcggtaatatacctctgattatccaaatatttaaagacggaggatcactcggta |
31325348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 11484902 - 11484823
Alignment:
| Q |
16 |
atgaactatgtggagtcgtgcattgttgagtctttactt--gtatctatgcatgatggttagtcctatttaaagacgggt |
93 |
Q |
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||||| ||||||||||||| ||||||||| ||| ||||| ||||| |||||| ||||| ||||| |||||||||||||| |
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| T |
11484902 |
atgaaatatgtggagtcgtacattgttgattctatactttggtatccatgcatcatggtcagtcccatttaaagacgggt |
11484823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 11510750 - 11510693
Alignment:
| Q |
16 |
atgaactatgtggagtcgtgcattgttgagtctttacttg-tatctatgcatgatggt |
72 |
Q |
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| T |
11510750 |
atgaactatatggagtcgtgcattgtcgattctatacttgatatccatgcatgatggt |
11510693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 33480196 - 33480071
Alignment:
| Q |
43 |
gagtctttacttgtatctatgcatgatggttagtcctatttaaagacgggtatttaaagaggggtggattaaatcggtaatatagctccgattatccaat |
142 |
Q |
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|||||| |||||||||| |||||| |||| |||||||||||| |||| ||||| | || |||||||| ||||| ||| ||| ||||||||||||||| |
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| T |
33480196 |
gagtctatacttgtatccatgcatcatggccagtcctatttaatgacgattatttgatgactggtggatt-aatcgataaaatacctccgattatccaat |
33480098 |
T |
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| Q |
143 |
tatttaaagaagggggaccactcggta |
169 |
Q |
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| ||| || | |||||| || |||||| |
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| T |
33480097 |
ttttttaaaacgggggatcattcggta |
33480071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 12876079 - 12876130
Alignment:
| Q |
118 |
ggtaatatagctccgattatccaattatttaaagaagggggaccactcggta |
169 |
Q |
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| T |
12876079 |
ggtaatataccttcgattatccaattatttaaagatgggggattactcggta |
12876130 |
T |
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