View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_48 (Length: 235)
Name: NF21359_high_48
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 44017228 - 44017455
Alignment:
| Q |
1 |
gcatgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagat |
100 |
Q |
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| T |
44017228 |
gcatgatgcttaagtttcacacaaacgttttaaacacaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagat |
44017327 |
T |
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| Q |
101 |
gagagaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017328 |
gagagaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgctactaaatgat |
44017427 |
T |
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| Q |
201 |
agagccaaaaccaaccttgtgatgatgt |
228 |
Q |
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| T |
44017428 |
agagccaaaaccaaccttgtgatgatgt |
44017455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 31037218 - 31037093
Alignment:
| Q |
2 |
catgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagta---gtatgtttaagaagggagataatagag |
98 |
Q |
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||||||||||| |||||||||||| ||||| ||| || |||||| | ||| |||||| ||||||||| ||| |||||||||| ||| ||||||| |
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| T |
31037218 |
catgatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagag |
31037119 |
T |
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| Q |
99 |
at--gagagaatggtcaaaaaggaat |
122 |
Q |
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| T |
31037118 |
ctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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