View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_high_54 (Length: 227)
Name: NF21359_high_54
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1599336 - 1599564
Alignment:
| Q |
1 |
tcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttata--ttaatttgttctactctcacttgtggagtgaagttattat |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1599336 |
tcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagttattat |
1599435 |
T |
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| Q |
99 |
tgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattgccgttt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1599436 |
tgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattgccgttt |
1599535 |
T |
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| Q |
199 |
tttaacaaaccatggtatatggaagttaa |
227 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
1599536 |
tttaacaaaccatggtatatggaagttaa |
1599564 |
T |
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