View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21359_high_7 (Length: 591)
Name: NF21359_high_7
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_high_7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 14802423 - 14801858
Alignment:
| Q |
1 |
agagatcacaggttcttgtccaaagggaaatccagcttcnnnnnnntcaacgtctcttgatacaaaataagttttggtttccaagtcaaatagcttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14802423 |
agagatcacaggttcttgtccaaagggaaatccagcttcaaaaaaatcaacgtctcttgatacaaaataagttttggtttccaagtcaaatagcttccat |
14802324 |
T |
|
| Q |
101 |
cctttctttccatgtgggtagcctacaaacacacacttcctacttctgctagcaaacttgtcacccttcctttcctgattatgtgcataacaaagagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14802323 |
cctttctttccatgtgggtagcctacaaacacacacttcctacttctgctagcaaacttgtcacccttcctttcctgattatgtgcataacaaagagatc |
14802224 |
T |
|
| Q |
201 |
caaagactctaagatgttcataggtaggtggcttcccattcaacacctcataagggcatttttcatttagcaatgttgtcggtgttctatttatcaaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14802223 |
caaagactctaagatgttcataggtaggtggcttcccattcaacacctcataagggcatttttcatttagcaatgttgtcggtgttctatttatcatata |
14802124 |
T |
|
| Q |
301 |
taaatccgttaaaatacattcacccaaaaaagaaataagaagattaccttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttca |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14802123 |
taaatccgttaaaatacattcaccccaaaaagaaataagaagattaccttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttca |
14802024 |
T |
|
| Q |
401 |
actcgtccattttgttgaggtgttccggtgcacgatgtttgaaacacaattccacgttc------------tagtttttctactaatgcaataaaattca |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
14802023 |
actcgtccattttgttgaggtgttccggtgcacgatgtttgaaacacaattccacgttcttgtttttcatattgtttttctactaatgcaataaaattca |
14801924 |
T |
|
| Q |
489 |
acaaagcacgaggtgcttctcttttatccaaaaacaagaaaatccaaattgctcgagaataatcat |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14801923 |
acaaagcacgaggtgcttctcttttatccaaaaacaagaaaatccaaattgctcgagaataatcat |
14801858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 14811297 - 14810732
Alignment:
| Q |
1 |
agagatcacaggttcttgtccaaagggaaatccagcttcnnnnnnntcaacgtctcttgatacaaaataagttttggtttccaagtcaaatagcttccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14811297 |
agagatcacaggttcttgtccaaagggaaatccagcttcaaaaaaatcaacgtctcttgatacaaaataagttttggtttccaagtcaaatagcttccat |
14811198 |
T |
|
| Q |
101 |
cctttctttccatgtgggtagcctacaaacacacacttcctacttctgctagcaaacttgtcacccttcctttcctgattatgtgcataacaaagagatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14811197 |
cctttctttccatgtgggtagcctacaaacacacacttcctacttctgctagcaaacttgtcacccttcctttcctgattatgtgcataacaaagagatc |
14811098 |
T |
|
| Q |
201 |
caaagactctaagatgttcataggtaggtggcttcccattcaacacctcataagggcatttttcatttagcaatgttgtcggtgttctatttatcaaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14811097 |
caaagactctaagatgttcataggtaggtggcttcccattcaacacctcataagggcatttttcatttagcaatgttgtcggtgttctatttatcatata |
14810998 |
T |
|
| Q |
301 |
taaatccgttaaaatacattcacccaaaaaagaaataagaagattaccttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttca |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14810997 |
taaatccgttaaaatacattcaccccaaaaagaaataagaagattaccttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttca |
14810898 |
T |
|
| Q |
401 |
actcgtccattttgttgaggtgttccggtgcacgatgtttgaaacacaattccacgttc------------tagtttttctactaatgcaataaaattca |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
14810897 |
actcgtccattttgttgaggtgttccggtgcacgatgtttgaaacacaattccacgttcttgtttttcatattgtttttctactaatgcaataaaattca |
14810798 |
T |
|
| Q |
489 |
acaaagcacgaggtgcttctcttttatccaaaaacaagaaaatccaaattgctcgagaataatcat |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14810797 |
acaaagcacgaggtgcttctcttttatccaaaaacaagaaaatccaaattgctcgagaataatcat |
14810732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 426
Target Start/End: Complemental strand, 6382147 - 6381774
Alignment:
| Q |
53 |
tctcttgatacaaaataagttttggtttccaagtcaaatagcttccatcctttctttccatgtgggtagcctacaaacacacacttcctacttctgctag |
152 |
Q |
| |
|
|||||||| ||||||||| ||||| | || | ||||| | ||||||||||||||| || | ||||| |||||||| ||||||||| | |||| ||| | |
|
|
| T |
6382147 |
tctcttgacacaaaataatttttgttgtctagatcaaacaacttccatcctttcttcccgggagggtatcctacaaatacacacttcttgcttcggctgg |
6382048 |
T |
|
| Q |
153 |
caaacttgtcacccttcctttcctgattatgtgcataacaaagagatccaaagactctaagatgttcataggtaggtggcttcccattcaacacctcata |
252 |
Q |
| |
|
|||||| ||||| |||||| | ||||||||||||||||| | ||||||||| || | | ||||||||| | |||||||| |||||| | || |||||| |
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|
| T |
6382047 |
taaacttatcacctttccttccttgattatgtgcataacataaagatccaaaaaccttcaaatgttcatatgaaggtggctgcccatttagcatctcata |
6381948 |
T |
|
| Q |
253 |
agggcatttttcatttagcaatgttgtcggtgttctatttatcaaatataaatccgttaaaatacattcacccaaaaaagaaataagaagattaccttga |
352 |
Q |
| |
|
||| |||| ||| || || | ||| || || |||||||| | ||| | ||||||| ||| |||||| | ||||||||| | | ||| | |||| |
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|
| T |
6381947 |
tggggtttttccatctaacagaggtgttggagtcctatttatgaggtatcctgctgttaaaacacactcaccccagaaagaaataggcaaattgctttga |
6381848 |
T |
|
| Q |
353 |
aatctcaatgctcgagccacattgagtatatgtctatgtttcctttcaactcgtccattttgttgaggtgttcc |
426 |
Q |
| |
|
||||||| |||||| || | || || |||||||| || || ||||| || |||||||||||||| || ||||| |
|
|
| T |
6381847 |
aatctcagtgctcgggcaatgtttaggatatgtctgtgctttctttcgacccgtccattttgttgtggcgttcc |
6381774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 555
Target Start/End: Complemental strand, 10834754 - 10834667
Alignment:
| Q |
468 |
ctactaatgcaataaaattcaacaaagcacgaggtgcttctcttttatccaaaaacaagaaaatccaaattgctcgagaataatcatc |
555 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||| ||||||| || |||||||||||||||| ||||||||||||||||| |
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|
| T |
10834754 |
ctactaatgcaataaagttcaacaaggcacgaggggcttcctttttatctaacaacaagaaaatccaaaccgctcgagaataatcatc |
10834667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 426
Target Start/End: Original strand, 1619606 - 1619979
Alignment:
| Q |
53 |
tctcttgatacaaaataagttttggtttccaagtcaaatagcttccatcctttctttccatgtgggtagcctacaaacacacacttcctacttctgctag |
152 |
Q |
| |
|
|||||||| ||||||||| ||||| | || | ||||| | ||||||||||||||| || | ||||| |||||||| ||||||||| | |||| ||| | |
|
|
| T |
1619606 |
tctcttgacacaaaataatttttgttgtctagatcaaacaacttccatcctttcttcccgggagggtatcctacaaatacacacttcttgcttcggctgg |
1619705 |
T |
|
| Q |
153 |
caaacttgtcacccttcctttcctgattatgtgcataacaaagagatccaaagactctaagatgttcataggtaggtggcttcccattcaacacctcata |
252 |
Q |
| |
|
|||||| ||||| |||||| | ||||||||||||||||| | ||||||||| || | | ||||||||| | |||| ||| |||||| | || |||||| |
|
|
| T |
1619706 |
taaacttatcacctttccttccttgattatgtgcataacataaagatccaaaaaccttcaaatgttcatatgaaggtagctgcccatttagcatctcata |
1619805 |
T |
|
| Q |
253 |
agggcatttttcatttagcaatgttgtcggtgttctatttatcaaatataaatccgttaaaatacattcacccaaaaaagaaataagaagattaccttga |
352 |
Q |
| |
|
||| |||| ||| || || | ||| || || |||||||| | ||| | ||||||| ||| |||||| | ||||||||| | | ||| | |||| |
|
|
| T |
1619806 |
tggggtttttccatctaacagaggtgttggagtcctatttatgaggtatcctgctgttaaaacacactcaccccagaaagaaataggcaaattgctttga |
1619905 |
T |
|
| Q |
353 |
aatctcaatgctcgagccacattgagtatatgtctatgtttcctttcaactcgtccattttgttgaggtgttcc |
426 |
Q |
| |
|
||||||| |||||| || | || || |||||||| || || ||||| || |||||||||||||| || ||||| |
|
|
| T |
1619906 |
aatctcagtgctcgggcaatgtttaggatatgtctgtgctttctttcgacccgtccattttgttgtggcgttcc |
1619979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 27689155 - 27689080
Alignment:
| Q |
348 |
cttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttcaactcgtccattttgttgaggtgt |
423 |
Q |
| |
|
||||||| |||||||| | |||||||| |||||||||| |||||| ||||| || | |||||||||||||||||| |
|
|
| T |
27689155 |
cttgaaacctcaatgcccttgccacattcagtatatgtcgatgttttctttccacccttccattttgttgaggtgt |
27689080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 13711597 - 13711522
Alignment:
| Q |
348 |
cttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttcaactcgtccattttgttgaggtgt |
423 |
Q |
| |
|
||||||| |||||||| | |||||||| |||||||||| |||||| ||||| || | |||||||||||||||||| |
|
|
| T |
13711597 |
cttgaaacctcaatgcccttgccacattcagtatatgtcgatgttttctttccacccttccattttgttgaggtgt |
13711522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 31401867 - 31401792
Alignment:
| Q |
348 |
cttgaaatctcaatgctcgagccacattgagtatatgtctatgtttcctttcaactcgtccattttgttgaggtgt |
423 |
Q |
| |
|
||||||| |||||||| | |||||||| |||||||||| |||||| ||||| || | |||||||||||||||||| |
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|
| T |
31401867 |
cttgaaacctcaatgcccttgccacattcagtatatgtcgatgttttctttccacccttccattttgttgaggtgt |
31401792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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