View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21359_low_1 (Length: 959)
Name: NF21359_low_1
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_1 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 903; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 9 - 959
Target Start/End: Original strand, 21433306 - 21434256
Alignment:
| Q |
9 |
acatcatcacatagaagtagaattagggtatttcaaactcatttattagagtagattcatctcctaaaactagcatcatcctcatgagtgaatttcctta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433306 |
acatcatcacatagaagtagaattagggtatttcaaactcatttattagagtagattcatctcctaaaactagcatcatcctcatgagtgaatttcctta |
21433405 |
T |
|
| Q |
109 |
cgactctttcttgatggtctggatttttatggctttttatatatgatgaaacaatagatatcgccagaggtagactctttgtattggagcataggcaaag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21433406 |
cgactctttcttgatggtctggatttttatggctttttatatatgatgaaacaatagatatcgccagaggtagactcttcgtattggagcataggcaaag |
21433505 |
T |
|
| Q |
209 |
aatggccaagttgaggccctttgtccgcacatttcttaaagaagcaagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcatta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433506 |
aatggccaagttgaggccctttgtccgcacatttcttaaagaagcaagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcatta |
21433605 |
T |
|
| Q |
309 |
gagatggccaggctgcttgatcctcaagggaaattcttcaaagataaggtgatttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433606 |
gagatggccaggctgcttgatcctcaagggaaattcttcaaagataaggtgatttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttg |
21433705 |
T |
|
| Q |
409 |
tgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttctgacttgttttttctgaattatgtaattggaat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433706 |
tgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttctgacttgttttttctgaattatgtaattggaat |
21433805 |
T |
|
| Q |
509 |
ggttagtgtagtgatagttaatctatgaacaatttcaaaatatacttctttttacctatacaaattgacaaattaaacacagttgtataatatgaatcaa |
608 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
21433806 |
ggttagtgtagtggtagttaatctatgaacaatttcaaaatatacttctttttacctatacaaatggacaaattaaacacaattgtataatatgaatcaa |
21433905 |
T |
|
| Q |
609 |
agaactctatagtcatatgaaatgcaaatgtaaaactgatttggtgccctatcattggaagtttgaactaacagctccataatcattgcaaagtaaaatt |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433906 |
agaactctatagtcatatgaaatgcaaatgtaaaactgatttggtgccctatcattggaagtttgaactaacagctccataatcattgcaaagtaaaatt |
21434005 |
T |
|
| Q |
709 |
gatttggaacagggatattaatgcacctcttttcaacactcatgttcccggaaaaaagagtattgctagcattcttcattggttagagcacaaataaact |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434006 |
gatttggaacagggatattaatgcacctcttttcaacactcatgttcccggaaaaaagagtattgctagcattcttcattggttagagcacaaataaact |
21434105 |
T |
|
| Q |
809 |
tgggaaaaaactactttattnnnnnnnnttaaacaaccaaatgatacgatcctacaaaatcggctagtaagttataaatacaactcattaatagcatcct |
908 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434106 |
tgggaaaaaactactttattaaaaaaaattaaacaaccaaatgatatgatcctacaaaatcggctagtaagttataaatacaactcattaatagcatcct |
21434205 |
T |
|
| Q |
909 |
tcaaatatctcattctaaaatcgctcttttggtctaacatgagtttgtgcc |
959 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21434206 |
tcaaatatctcattctaaaatcgctcttttggtctaaaatgagtttgtgcc |
21434256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 161 - 627
Target Start/End: Original strand, 27152431 - 27152895
Alignment:
| Q |
161 |
aatagatatcgccagaggtagactctttgtattggagcataggcaaagaatggccaagttgaggccctttgtccgcacatttcttaaagaagcaagtaaa |
260 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||| || |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
27152431 |
aatagatattgccagaggtagcctcttcgtattgga---tatgcaaagaatgaacaagttgaggcccttcgtccgtacatttcttaaagaagcaagtgaa |
27152527 |
T |
|
| Q |
261 |
atgtttgaaatgtacatctacaccatgggtgatcggcggtactcattagagatggccaggctgcttgatcctcaagggaaattcttcaaagataaggtga |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||| ||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
27152528 |
gtgtttgaaatgtacatctacaccatgggtattcggcagtattcactagagatggccaagctgcttgatcctcaagtggaatacttcaaagataaggtga |
27152627 |
T |
|
| Q |
361 |
tttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgat-aataaaaaggtga |
459 |
Q |
| |
|
||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| || |||||||||||||| || |||||||||| |
|
|
| T |
27152628 |
tttattgagatgatgggactgaaatgaagcagaaggatctgaatgttgtgttggggacaaaaagtgtaataataattcttgatgataaaaaaaaaggtga |
27152727 |
T |
|
| Q |
460 |
gtgcgctgctagtttctgacttgttttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatga-----acaatttcaaaatatact |
554 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||| ||||||||||||| | |||||||||||||||||| | ||| |||||| || | |
|
|
| T |
27152728 |
gtgcactgctagtttctgattggttttttctgaattatctaattggaatggt-----tcgtgatagttaatctatgaggatgaaaatctcaaaacatttt |
27152822 |
T |
|
| Q |
555 |
tctttttacctatacaaattgacaaattaaacacagttgtataatatgaatcaaagaactctatagtcatatg |
627 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
27152823 |
tctttttacctatatgaattaacaaactaaacacaattgtataatatgaatcaaagaacgctataatcatatg |
27152895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 148 - 508
Target Start/End: Complemental strand, 27075854 - 27075494
Alignment:
| Q |
148 |
tatatgatgaaacaatagatatcgccagaggtagactctttgtattggagcataggcaaagaatggccaagttgaggccctttgtccgcacatttcttaa |
247 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| ||||| | |||| ||||| |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27075854 |
tatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggcgcatatgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaa |
27075755 |
T |
|
| Q |
248 |
agaagcaagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcattagagatggccaggctgcttgatcctcaagggaaattcttc |
347 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| | ||| |||| |
|
|
| T |
27075754 |
acaagcaagtgaaatgtttgaaatgtacatctacaccatgggtgatcggcaatattcattagagatggctaggctgcttgatcctcaagaggaatacttc |
27075655 |
T |
|
| Q |
348 |
aaagataaggtgatttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgata |
447 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||| ||| | |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
27075654 |
aaagataaggtaatttctcgagaggatgggactcaaaagaatgtgaaggatctggatcttgtgttggggacagaaaattctatcttaattcttgatgata |
27075555 |
T |
|
| Q |
448 |
ataaaaaggtgagtgcgctgctagtttctgacttgttttttctgaattatgtaattggaat |
508 |
Q |
| |
|
| || |||||||||| ||||||||||||||||||||||| | ||||| | ||||| |||| |
|
|
| T |
27075554 |
aagaagaggtgagtgcactgctagtttctgacttgtttttgcggaattgtttaattagaat |
27075494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 148 - 475
Target Start/End: Original strand, 27028265 - 27028592
Alignment:
| Q |
148 |
tatatgatgaaacaatagatatcgccagaggtagactctttgtattggagcataggcaaagaatggccaagttgaggccctttgtccgcacatttcttaa |
247 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| ||||| | ||||||||| |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27028265 |
tatatgatgaaacaatagatatctctaaaggtagcctcttcatgttggagcatgtgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaa |
27028364 |
T |
|
| Q |
248 |
agaagcaagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcattagagatggccaggctgcttgatcctcaagggaaattcttc |
347 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | |||| |
|
|
| T |
27028365 |
agaagcaagtgaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcgttagagatggccaagctgcttgatcctcaagggctctacttc |
27028464 |
T |
|
| Q |
348 |
aaagataaggtgatttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgata |
447 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||| ||| | |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
27028465 |
aaagataaggtaatttctcgagaggatgggactcaaaagaacgtgaaggatctggatcttgtgttggggacagaaaattctatcttaattcttgatgata |
27028564 |
T |
|
| Q |
448 |
ataaaaaggtgagtgcgctgctagtttc |
475 |
Q |
| |
|
| || |||||||||| ||||||||||| |
|
|
| T |
27028565 |
aagaagaggtgagtgcactgctagtttc |
27028592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 154 - 463
Target Start/End: Original strand, 26989452 - 26989761
Alignment:
| Q |
154 |
atgaaacaatagatatcgccagaggtagactctttgtattggagcataggcaaagaatggccaagttgaggccctttgtccgcacatttcttaaagaagc |
253 |
Q |
| |
|
||||||||||||||||| | | |||||| ||||| | ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26989452 |
atgaaacaatagatatctctaaaggtagcctcttcatgttggagcatgtgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaagaagc |
26989551 |
T |
|
| Q |
254 |
aagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcattagagatggccaggctgcttgatcctcaagggaaattcttcaaagat |
353 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
26989552 |
aagtgaaatgtttgaaatgtacatctacaccatgggtgatcggcagtactcattagagatggccaggctgcttgatcctcaaggggaatacttcaaagat |
26989651 |
T |
|
| Q |
354 |
aaggtgatttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaa |
453 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||| | ||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||| || || |
|
|
| T |
26989652 |
aaggtaatttctcgagatgatgggactcaaaagaacgtgaaagatctggatcttgtgttggggacagaaaattctatcataattcttgatgacaaagaag |
26989751 |
T |
|
| Q |
454 |
aggtgagtgc |
463 |
Q |
| |
|
|||||||||| |
|
|
| T |
26989752 |
aggtgagtgc |
26989761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 27152167 - 27152300
Alignment:
| Q |
21 |
agaagtagaattagggtatttcaaactcatttat-tagagtagattcatctcctaaaactagcatcatcctcatgagtgaatttccttacgactctttct |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27152167 |
agaagtagaattagggcatttcaaactcatttatatagagtaaattcatctcctaaaaatagcaccatcctcatgagtgaatttccttacaactctttct |
27152266 |
T |
|
| Q |
120 |
tgatggtctggatttttatggctttttatatatg |
153 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| |
|
|
| T |
27152267 |
tgattgtctgggtttttatggctttttatatatg |
27152300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 691 - 756
Target Start/End: Original strand, 27152991 - 27153055
Alignment:
| Q |
691 |
tcattgcaaagtaaaattgatttggaacagggatattaatgcacctcttttcaacactcatgttcc |
756 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
27152991 |
tcattgcaaagtaaa-ttgatttggaaccgagatattaatgcacctcttttcaacactcattttcc |
27153055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 154 - 463
Target Start/End: Original strand, 34691527 - 34691836
Alignment:
| Q |
154 |
atgaaacaatagatatcgccagaggtagactctttgtattggagcataggcaaagaatggccaagttgaggccctttgtccgcacatttcttaaagaagc |
253 |
Q |
| |
|
||||||||||||||||| | | |||||| ||||| | ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691527 |
atgaaacaatagatatctctaaaggtagcctcttcatgttggagcatgtgcaagtaatgaccaagttgaggccctttgtccgcacatttcttaaagaagc |
34691626 |
T |
|
| Q |
254 |
aagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcattagagatggccaggctgcttgatcctcaagggaaattcttcaaagat |
353 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34691627 |
aagtgaaatgtttgaaatgtacatctacaccatgggtgatcggcagtactcattagagatggccaggctgcttgatcctcaaggggaatacttcaaagat |
34691726 |
T |
|
| Q |
354 |
aaggtgatttctcgagatgatgggactgaaatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaa |
453 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||| | ||| |||||| ||||||||||||||||||||| ||||||| ||||||||||||| || || |
|
|
| T |
34691727 |
aaggtaatttctcgagatgatgggactcaaaagaacgtgaaagatctggatcttgtgttggggacagaaaattctatcgtaattcttgatgacaaagaag |
34691826 |
T |
|
| Q |
454 |
aggtgagtgc |
463 |
Q |
| |
|
|||||||||| |
|
|
| T |
34691827 |
aggtgagtgc |
34691836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 216 - 380
Target Start/End: Complemental strand, 50173018 - 50172854
Alignment:
| Q |
216 |
aagttgaggccctttgtccgcacatttcttaaagaagcaagtaaaatgtttgaaatgtacatctacaccatgggtgatcggcggtactcattagagatgg |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| || |||| ||||||| |
|
|
| T |
50173018 |
aagttgaggccctttgtccgtacatttcttaaagaagcaagtgaaatgtttgagatgtacatctacaccatgggtgataggccctatgcattggagatgg |
50172919 |
T |
|
| Q |
316 |
ccaggctgcttgatcctcaagggaaattcttcaaagataaggtgatttctcgagatgatgggact |
380 |
Q |
| |
|
||| |||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
50172918 |
ccaagctgcttgatcctcaaggagaatacttcaattctaaagtgatttctcgagatgatgggact |
50172854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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