View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_13 (Length: 459)
Name: NF21359_low_13
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 21434692 - 21434383
Alignment:
| Q |
1 |
catcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434692 |
catcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgattt |
21434593 |
T |
|
| Q |
101 |
gcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatttgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434592 |
gcaattgaggtcgaattcctggcaacttgaattgaaaaagtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatttgt |
21434493 |
T |
|
| Q |
201 |
tagcaacattttcatacattttctat-aaaagtggcgacttctgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatataga |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434492 |
tagcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatataga |
21434393 |
T |
|
| Q |
300 |
gaataaactt |
309 |
Q |
| |
|
|||||||||| |
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|
| T |
21434392 |
gaataaactt |
21434383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 301 - 459
Target Start/End: Original strand, 21434098 - 21434256
Alignment:
| Q |
301 |
aataaacttgggaaaaaactactttattnnnnnnnnttaaacaaccaaatgatacgatcctacaaaatcggctagtaagttataaatacaactcattaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21434098 |
aataaacttgggaaaaaactactttattaaaaaaaattaaacaaccaaatgatatgatcctacaaaatcggctagtaagttataaatacaactcattaat |
21434197 |
T |
|
| Q |
401 |
agcatccttcaaatatctcattctaaaatcgctcttttggtctaacatgagtttgtgcc |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21434198 |
agcatccttcaaatatctcattctaaaatcgctcttttggtctaaaatgagtttgtgcc |
21434256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 26990525 - 26990328
Alignment:
| Q |
1 |
catcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgattt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||| ||||||| |||||||||| ||| ||||||||||||| |
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| T |
26990525 |
catcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcattttcattctcatcaatattcaatgcagcaagtgattt |
26990426 |
T |
|
| Q |
101 |
gcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacattt |
198 |
Q |
| |
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||| | |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||||||||||||| |
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| T |
26990425 |
gcattggaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattt |
26990328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27029407 - 27029211
Alignment:
| Q |
1 |
catcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgattt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
27029407 |
catcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatattcaatgcagcaagtgattt |
27029308 |
T |
|
| Q |
101 |
gcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatt |
197 |
Q |
| |
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||| | |||| | || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || ||||||||||||||||| |
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| T |
27029307 |
gcattggaggccaaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacatt |
27029211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 27074407 - 27074576
Alignment:
| Q |
1 |
catcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgattt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||||||||||| |||||||||||||| || |||||||||| |
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| T |
27074407 |
catcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcagtttcattctcatcaatatgcaatgcaacaagtgattt |
27074506 |
T |
|
| Q |
101 |
gcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatct |
170 |
Q |
| |
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|| | |||| | || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27074507 |
gcgttggaggccaaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatct |
27074576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 309
Target Start/End: Complemental strand, 27153358 - 27153214
Alignment:
| Q |
160 |
tcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaa-gtggcgacttctgaatc----attaagt |
254 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||| || | |||||||||||| ||||||| |
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| T |
27153358 |
tcagattatctttgtgcttctgccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagt |
27153269 |
T |
|
| Q |
255 |
ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactt |
309 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| || || |||||||||||||| |
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|
| T |
27153268 |
ggatagatctttagcacatttgaaactatgagctgggtatttagagaataaactt |
27153214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 26990263 - 26990196
Alignment:
| Q |
242 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactt |
309 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | |||||||||||||||| |
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|
| T |
26990263 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactt |
26990196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34692782 - 34692585
Alignment:
| Q |
1 |
catcgaagaatttggagttgatatgtctaagcactttgagaattctggcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgattt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||| ||| ||| |||||||||| |||||| ||||||| |||||||||| ||| ||||||||||||| |
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|
| T |
34692782 |
catcgaagaatttgtagttgatctgtcttagcacttcgagtattttggcaagcgcaccatcaatttcattctcatcaatattcaatgcagcaagtgattt |
34692683 |
T |
|
| Q |
101 |
gcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacattt |
198 |
Q |
| |
|
||| | |||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||||||||||||| |
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|
| T |
34692682 |
gcattggaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattt |
34692585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 34692325 - 34692258
Alignment:
| Q |
242 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactt |
309 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | |||||||||||||||| |
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|
| T |
34692325 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactt |
34692258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 50172191 - 50172351
Alignment:
| Q |
48 |
gcaagcgctccatcagtttcattttcatcaatatgcaactcagcaagtgatttgcaattgaggtcgaattcctggcaacttgaattgaaaaggtggtatc |
147 |
Q |
| |
|
||||| |||||||| |||||||||||||| | | | |||||||| ||||||||||||| | | || | | | || |||||| |||| ||||||| |
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|
| T |
50172191 |
gcaagtgctccatctgtttcattttcatcgctcttcgtttcagcaagagatttgcaattgaagccaaactgccgacagcttgaagcaaaaaaatggtatc |
50172290 |
T |
|
| Q |
148 |
tctccatcaatatcagattatctttatgcatccgccatacctacaacatttgttagcaaca |
208 |
Q |
| |
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| ||||||||||||||||| | ||||||| || |||| |||||||||||| ||||||||| |
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|
| T |
50172291 |
tttccatcaatatcagattgtttttatgcttcatccatgcctacaacattttttagcaaca |
50172351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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