View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_15 (Length: 454)
Name: NF21359_low_15
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 12245235 - 12244877
Alignment:
| Q |
22 |
tttggatccgaatgttatgtgtttgtgttgtccgtgttttaattaacaggatttatattcgtgcacattgattactcgtaaaccttgaaatgattatacc |
121 |
Q |
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| T |
12245235 |
tttggatccgaatgttatgtgtttgtgttgtccgtgttttaattaacaggatttatattcgtgcacatcgattactcgtaaaccttgaaatgattatacc |
12245136 |
T |
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| Q |
122 |
gcgaagaaatgtcataaaatgttgattccttatgaagatggtaagatttgtgaaatggttatgagagcacataaaatactcataaccaccaatgattttt |
221 |
Q |
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| T |
12245135 |
gcgaagaagtgtcataaaatgttgattccttatgaagatggtaaaatttgtgaaatggttatgagagcacataaaatactcataaccaccaatgattttt |
12245036 |
T |
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| Q |
222 |
caatccataatatttttgaagtttgttataaccataaaatgtggattttatgtgaagaatcgcataagttttctccannnnnnnnnnatagcttagctca |
321 |
Q |
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| T |
12245035 |
caatccataatatttttgaagtttgttataaccataaaatgtggattttatgtgaagaatcacatgagttttgtcca--ttttttttatagcttagctca |
12244938 |
T |
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| Q |
322 |
ttcctgtcaacaacttttttgatgttgatggtggtttgttttcacttgctttcaccctctt |
382 |
Q |
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| T |
12244937 |
ttcctgtcaacaacttttttaatgttgatggtggtttgttttcacttgctttcaccctctt |
12244877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 192 - 418
Target Start/End: Complemental strand, 12251677 - 12251447
Alignment:
| Q |
192 |
ataaaatactcataaccaccaatgatttttc-aatccataatatttttgaagtttgttataaccataaaatgtggattttatgtgaagaatcgcataagt |
290 |
Q |
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| T |
12251677 |
ataaaatactcataactatggatgatttttcgaatccataatatttttgaagtttgttataaccacaaaatgtggattttatgtgaagaaccacttaagt |
12251578 |
T |
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| Q |
291 |
tttctccannnnnnnnnnatagcttagctcattcctgtcaacaacttttttgatgttgatggtggtttgttttcacttgct------ttcaccctcttgc |
384 |
Q |
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| T |
12251577 |
tttgtcca---attttttatagcttagtacattcttgtcaacaacttttttgatgcacacggtggtttgttttcacttgctttccccttcaccctcttgc |
12251481 |
T |
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| Q |
385 |
ttttaatgttgttaatcatatatacatttatttt |
418 |
Q |
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| T |
12251480 |
ttttaatgttgtcaatcaaatatacatttatttt |
12251447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 12252838 - 12252680
Alignment:
| Q |
32 |
aatgttatgtgtttgtgttgtccgtgttttaattaacaggatttatattcgtgcacattgattactcgtaaaccttgaaatgattataccgcgaagaaat |
131 |
Q |
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|||||| |||||||||||||| ||||||||| || | ||||||||||| ||||||| |||| || |||||||||| ||||||||||| || | || |
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| T |
12252838 |
aatgttgtgtgtttgtgttgttcgtgttttagacaatatgatttatattcatgcacatcgattcctggtaaaccttgtaatgattatactgcagaaaagg |
12252739 |
T |
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| Q |
132 |
gtcataaaatgttgattccttatgaagatggtaagatttgtgaaatggttatgagagca |
190 |
Q |
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| T |
12252738 |
gtcataaaatgttgattgcctgtgaagatgataaaatttatgaaatggcaatgagagca |
12252680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 22825751 - 22825657
Alignment:
| Q |
189 |
cacataaaatactcataaccaccaatgatttttcaa-tccataatatttttgaagtttgttataaccataaaatgtggattttatgtgaagaatc |
282 |
Q |
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| T |
22825751 |
cacataaaatactcataactatcaatgattttttaaatccataattttcttaaagtttgatataagtataaattgtgaattttatgtgaataatc |
22825657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 25917802 - 25917733
Alignment:
| Q |
189 |
cacataaaatactcataaccaccaatgatttttcaa-tccataatatttttgaagtttgttataaccata |
257 |
Q |
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| T |
25917802 |
cacataaaatattcataactaccaatgatttttcaagtccaaatttttcttcaggtttgttataaccata |
25917733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 29869911 - 29869975
Alignment:
| Q |
190 |
acataaaatactcataaccaccaatgatttttc-aatccataatatttttgaagtttgttataac |
253 |
Q |
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| T |
29869911 |
acataaaatactcataactaccaatgatttctcaaatccacaattttctcaaagtttgttataac |
29869975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 33355297 - 33355205
Alignment:
| Q |
189 |
cacataaaatactcataaccaccaatgatttttcaa-tccataatatttttgaagtttgttataaccataaaatgtggattttatgtgaagaa |
280 |
Q |
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||||| ||||||||||||| ||||||||||| |||| |||| || || | ||||||||||||| || || | ||| ||||||||||||||| |
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| T |
33355297 |
cacatcaaatactcataactaccaatgatttctcaaatccacaaatttctcaaagtttgttataagcacaacaagtgaattttatgtgaagaa |
33355205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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