View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_17 (Length: 430)
Name: NF21359_low_17
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 44016606 - 44017010
Alignment:
| Q |
19 |
gtcttgaagacaaagaacttcaagtgaagtgagatttgaaaattgttgtggaatggttcctgttaatctgtttgagtttaagaaaaggaattgaagagaa |
118 |
Q |
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| T |
44016606 |
gtcttgaagacaaagaacttcaagtgaagtgagatttgaaaattgttttggaatggttcctgttaatctgtttgagtttaagaaaaggaattgaagagaa |
44016705 |
T |
|
| Q |
119 |
gagaggcttccaagttcattaggaatggaaccagtgagagagtttgaggagaggtcaaggagttgaagatgggagagttgaccaaaagaaggtgggatag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016706 |
gagaggcttccaagttcattaggaatggaaccagtgagagagtttgaggagaggtcaaggagttgaagatgggagagttgaccaaaagaaggtgggatag |
44016805 |
T |
|
| Q |
219 |
agccagagagattggttgaagagagattaagaagctgaagcattgttaaagaggatagttgagatggtaaagaagtgaggttgaggaaagtatcagggat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016806 |
agccagagagattggttgaagagagattaagaagctgaagcattgttaaagaggatagttgagatggtaaagaagtgaggttgaggaaagtatcagggat |
44016905 |
T |
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| Q |
319 |
agaaagggaaatcactctagattgtggtgaacaagttatgcctttccatgaacatggtgttgatgttgaagggttccatgaagagagaatagaaggtgat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016906 |
agaaagggaaatcactctagattgtggtgaacaagttatgcctttccatgaacatggtgttgatgttgaagggttccatgaagagagaatagaaggtgat |
44017005 |
T |
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| Q |
419 |
gatgt |
423 |
Q |
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||||| |
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| T |
44017006 |
gatgt |
44017010 |
T |
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