View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_21 (Length: 411)
Name: NF21359_low_21
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 23 - 386
Target Start/End: Complemental strand, 71628 - 71265
Alignment:
| Q |
23 |
caagaacctagtaattccacataaaactctcgaaactagttacaacaccattattaacaagtccatcatcaccaacacaacaaccatcttcttcttgtgt |
122 |
Q |
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| T |
71628 |
caagaacctagtaattccacataaaactctcgaaactagttacaacaccattattaacaagtccatcatcaccaacacaacaaccatcttcttcttgtgt |
71529 |
T |
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| Q |
123 |
tgtttgtagccatgtcattggttgctgatacatcatccaagcatagtcttgtgcttgtgagtcaacatagacaaattcctctttcccaacatcatcataa |
222 |
Q |
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| T |
71528 |
tgtttgtagccatgtcattggttgctgatacatcatccaagcatagtcttgtgcttgtgagtcaacatagacaaattcctctttcccaacatcatcataa |
71429 |
T |
|
| Q |
223 |
ccgttttccaaagttggtagctcaataatctcactaagttcttcagaagtagctgacaagtctgctgatgaagacagagttttcgttgtcttcattaaca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
71428 |
ccgttttccaaagttggtagctcaataatctcactaagttcttcagaagtagctgacaagtctgctgatgaagacagagtttttgttgtcttcattaaca |
71329 |
T |
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| Q |
323 |
aacttgttgatgttgatatcgttgtcaacgaagatgttgacaacgatgacaatgatgaagaaga |
386 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
71328 |
gacttgttgatgttgacatcgttgtcaacgaagatgttgacaacgatgacaatgaagaagaaga |
71265 |
T |
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