View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_23 (Length: 372)
Name: NF21359_low_23
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 147 - 357
Target Start/End: Complemental strand, 4304508 - 4304298
Alignment:
| Q |
147 |
aggatgaagatatcaggtgcttcatacaagcctagtttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatcc |
246 |
Q |
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| T |
4304508 |
aggatgaagatatcaggtgcttcatacaagcctagtttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatcc |
4304409 |
T |
|
| Q |
247 |
attgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctgaacaccccg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4304408 |
attgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctgaacaccccg |
4304309 |
T |
|
| Q |
347 |
tgaaagaaagt |
357 |
Q |
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||||||||||| |
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| T |
4304308 |
tgaaagaaagt |
4304298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 355
Target Start/End: Original strand, 4249925 - 4250045
Alignment:
| Q |
235 |
ttgttgtgatccattgtgatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtag |
334 |
Q |
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||||||| | |||||||||||||| |||||| |||||||||| |||||| |||||||| |||||||||||||||| | |||||||| | ||| |||| |
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| T |
4249925 |
ttgttgttagccattgtgatactgataggatgagtattatccttatattaatcttgagttacttaggatttccatttttagcagctgctggaatatgtag |
4250024 |
T |
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| Q |
335 |
ctgaacaccccgtgaaagaaa |
355 |
Q |
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|||||||| || |||| |||| |
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| T |
4250025 |
ctgaacactccatgaaggaaa |
4250045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 52 - 357
Target Start/End: Original strand, 41936195 - 41936491
Alignment:
| Q |
52 |
ttttacaataaaatacgatttcaattttcataatttttagtgcttaaatcagtcattacatgttctttagctttgacgtaggctcttagacttgtaggat |
151 |
Q |
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|||||| |||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
41936195 |
ttttacgataaaatatgatttcaatttctataatttttactgcttaactcagtcattacatgttctttagctttgttgtaggctcttagacttgtaatat |
41936294 |
T |
|
| Q |
152 |
gaagatatcaggtgcttcatacaagcctagtttggatattccacttcactttttggtaacatatcatactcattcgtcattaattgttgtgatccattgt |
251 |
Q |
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||||| |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||| ||||||| |
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| T |
41936295 |
gaagaaatcaggtgcttcgcacaagactaatttggatattccacttccctttttggtaacatatcatactcattagtcattagttgctgtgggccattgt |
41936394 |
T |
|
| Q |
252 |
gatactgctaggattagtattatccatatatttgatttgagttaattaggatttccattttaaacagctgctcggataagtagctg-aacaccccgtgaa |
350 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |||| ||||||| ||||| || |||| |
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| T |
41936395 |
----------ggattagtattatccatatattcaatttgggttaattaggatttcaattttaaacagctgctgagatatgtagctgtaacactccatgaa |
41936484 |
T |
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