View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_27 (Length: 359)
Name: NF21359_low_27
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 153 - 344
Target Start/End: Complemental strand, 443400 - 443208
Alignment:
| Q |
153 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaatgaataataaatttagggattgttatatat |
252 |
Q |
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| T |
443400 |
ttagtccctgaatctgcaagcatcaatcatattagtgtctgaatctagagaccaattgactaatcactaatgaatgataaatttagggattgttatatat |
443301 |
T |
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| Q |
253 |
gatatgagtatatgactagtgcttaaaaactcagaaaccaaaattatagtttccttaaattgggta-ttagcacgacatacacacaagttact |
344 |
Q |
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| T |
443300 |
gatatgagtatatgactagtgcttaaaaactcagaaaccaaaattatagtttccttaaattgggtacttagcacgacatacacacaagttact |
443208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 443519 - 443394
Alignment:
| Q |
1 |
tttttcatcaaaccacactttcct--ggtaaagctcccacagagtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtccctaaa |
98 |
Q |
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| T |
443519 |
tttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaaattgtattgacttaaccataagtttggtccctaaa |
443420 |
T |
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| Q |
99 |
tatgtaaggacccataacattagtcc |
124 |
Q |
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| T |
443419 |
tatgtaaggacccataacattagtcc |
443394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 444734 - 444670
Alignment:
| Q |
1 |
tttttcatcaaaccacactttcct--ggtaaagctcccacagagtcacaagcactctcttggcaa |
63 |
Q |
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| T |
444734 |
tttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
444670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 465402 - 465466
Alignment:
| Q |
1 |
tttttcatcaaaccacactttcctg--gtaaagctcccacagagtcacaagcactctcttggcaa |
63 |
Q |
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|||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||| |||||| |
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| T |
465402 |
tttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaa |
465466 |
T |
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