View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_28 (Length: 353)
Name: NF21359_low_28
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 2708494 - 2708167
Alignment:
| Q |
1 |
aatattacatagttgcctgacagtactatgcagattctttgtgctgaagactaaatatgctactctcaaatatggttttatatttatttctaggatttgt |
100 |
Q |
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| T |
2708494 |
aatattacatagttgcctgacagtactgtgcagattctttgtgctgaagactaaatatgctactctcaaatatggtcttatatttatttctaggatttgt |
2708395 |
T |
|
| Q |
101 |
ttctgaaccaaggctggagatgtgtgctataatggttcagtcaacatgattactttaactgaattatgtcatgttgagtcagttgggatagataactgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2708394 |
ttctgaaccaaggctggagatgtgtgctataatggttcagtcaacatgattactttaactgaattatgtcatgttgagtcagttgggatagataactgtt |
2708295 |
T |
|
| Q |
201 |
tctatagggtgttagttagctagctggttattatgtctattagttatgattttatgaacaattgatcaaaactcacgttgaatcacaccattgaaatttc |
300 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2708294 |
tctaaagggtgttagttagctagctggttactatgtctattagtt--------atgaacaattgatcaaaactcacgttgaatcacaccattgaaatttc |
2708203 |
T |
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| Q |
301 |
atttgtaatctttaaagagaaaatgaattgatgaac |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2708202 |
atttgtaatctttaaagagaaaatgaattgatgaac |
2708167 |
T |
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