View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21359_low_29 (Length: 351)
Name: NF21359_low_29
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 92 - 317
Target Start/End: Complemental strand, 7143311 - 7143086
Alignment:
| Q |
92 |
ttatcaacatattatatcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatccttt |
191 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||| ||| |
|
|
| T |
7143311 |
ttatcaacatattgtatcattccaaatgacatattttggaagcaaggtggtattgaagcattgagcatgttttctgataggtctattttgtcgatctttt |
7143212 |
T |
|
| Q |
192 |
ttaaccgactcaattgaattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatttc |
291 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7143211 |
ttaaccgacacaattgaattggaatatctccttccaaattgttccttcctaataaaagaacacgtaactctgatagcttatccatccagttgggaatttt |
7143112 |
T |
|
| Q |
292 |
acatgaaaattttttctccttcaaat |
317 |
Q |
| |
|
|| ||||| ||| |||||| |||||| |
|
|
| T |
7143111 |
acttgaaagtttgttctccctcaaat |
7143086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 94 - 317
Target Start/End: Original strand, 4855947 - 4856170
Alignment:
| Q |
94 |
atcaacatattatatcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatccttttt |
193 |
Q |
| |
|
|||||| |||| | |||||||||||||||||||| |||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
4855947 |
atcaacgtattgtctcattccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtcgatctttttt |
4856046 |
T |
|
| Q |
194 |
aaccgactcaattgaattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatttcac |
293 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
4856047 |
aaccgacacaattgaattggaatatctccttccaagttgttccctcctagtaaaagaacacgtaactctgataggttatccatccagtggggaattttac |
4856146 |
T |
|
| Q |
294 |
atgaaaattttttctccttcaaat |
317 |
Q |
| |
|
||||||||| |||||| |||||| |
|
|
| T |
4856147 |
ctgaaaatttgttctccctcaaat |
4856170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 108 - 317
Target Start/End: Complemental strand, 5214953 - 5214744
Alignment:
| Q |
108 |
tcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatcctttttaaccgactcaattg |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| |||||||||||||||| | ||||||||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
5214953 |
tcattccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtctatcttttttaaccgacacaattg |
5214854 |
T |
|
| Q |
208 |
aattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatttcacatgaaaattttttc |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||| ||| |
|
|
| T |
5214853 |
aattggaatatctccttccaatttgttccctcctagtaaaagaacacgtaactctgatagcttatccatccagtggggaattttacctgaaaatttgttc |
5214754 |
T |
|
| Q |
308 |
tccttcaaat |
317 |
Q |
| |
|
||| |||||| |
|
|
| T |
5214753 |
tccctcaaat |
5214744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 90 - 317
Target Start/End: Complemental strand, 5174073 - 5173846
Alignment:
| Q |
90 |
cattatcaacatattatatcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatcct |
189 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||||||| || ||||| ||||||| |||||||||||||||| | ||||| ||||||||||||||| | |
|
|
| T |
5174073 |
cattatgaacatattgtctcattccaaatgacatattttggaggcaagatggtattgaagcattgagcatgttccgtgatagatccattatgtcgatctt |
5173974 |
T |
|
| Q |
190 |
ttttaaccgactcaattgaattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatt |
289 |
Q |
| |
|
||| |||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||| |
|
|
| T |
5173973 |
tttgaaccaacaaaattgaattggaatttctccttcaaaattgttccctcctaataaaagaaccctcaactctgagagcttatccatccagttgggaatt |
5173874 |
T |
|
| Q |
290 |
tcacatgaaaattttttctccttcaaat |
317 |
Q |
| |
|
| || ||||| ||| |||||| |||||| |
|
|
| T |
5173873 |
ttacctgaaagtttgttctccctcaaat |
5173846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 94 - 317
Target Start/End: Complemental strand, 5196810 - 5196587
Alignment:
| Q |
94 |
atcaacatattatatcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatccttttt |
193 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||| ||||||| |||||| ||||||||||||||||| | |||| ||||||||||| |||| ||||| |
|
|
| T |
5196810 |
atcaacatattgtctcattccaaataacatatttcgaaagcaagatggtatggaagcattgagcatgtttcgtgataagtccattatgttgatctttttt |
5196711 |
T |
|
| Q |
194 |
aaccgactcaattgaattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatttcac |
293 |
Q |
| |
|
||||||| ||| || |||||||| |||||||| ||||||||||||||||||||||| || | ||| ||||| ||||||||||||||||||||||||| | |
|
|
| T |
5196710 |
aaccgacacaactgcattggaatttctccttcaaaattgttccctcctaataaaaggacccttaattctgagaacttatccatccagttgggaatttttc |
5196611 |
T |
|
| Q |
294 |
atgaaaattttttctccttcaaat |
317 |
Q |
| |
|
||||||||| |||||| |||||| |
|
|
| T |
5196610 |
ctgaaaatttgttctccctcaaat |
5196587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 94 - 303
Target Start/End: Complemental strand, 5183405 - 5183195
Alignment:
| Q |
94 |
atcaacatattatatcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatccttttt |
193 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| | |||| ||||||||||| |||| ||||| |
|
|
| T |
5183405 |
atcaacatattgtctcattccaaatgacatattttgaaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatgttgatctttttt |
5183306 |
T |
|
| Q |
194 |
a-accgactcaattgaattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatttca |
292 |
Q |
| |
|
| | ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| || | ||||||||| | |||||||||||| |||||||||| | |
|
|
| T |
5183305 |
agaaggacacaattgaattggaatatctccttcaaaattgttccctcctaatagaaggacccttaactctgagagcttatccatccaattgggaatttta |
5183206 |
T |
|
| Q |
293 |
catgaaaattt |
303 |
Q |
| |
|
| ||||||||| |
|
|
| T |
5183205 |
cctgaaaattt |
5183195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 317
Target Start/End: Original strand, 4841446 - 4841673
Alignment:
| Q |
90 |
cattatcaacatattatatcattccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatcct |
189 |
Q |
| |
|
|||||| ||||| || | ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| | |||| |||||||||| ||| | |
|
|
| T |
4841446 |
cattatgaacatgttgtctcattccaaatgacatattttggaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatggtgatatt |
4841545 |
T |
|
| Q |
190 |
ttttaaccgactcaattgaattggaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatt |
289 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||| |||||| | ||||||||| | |||||||||||| ||||||||| |
|
|
| T |
4841546 |
ttttagatgacacaattgaattggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatccaattgggaatt |
4841645 |
T |
|
| Q |
290 |
tcacatgaaaattttttctccttcaaat |
317 |
Q |
| |
|
| || ||||| ||| |||||| |||||| |
|
|
| T |
4841646 |
ttacctgaaagtttgttctccctcaaat |
4841673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 317
Target Start/End: Complemental strand, 5161144 - 5160940
Alignment:
| Q |
113 |
ccaaatgacatattttagaagcaaggtggtattaaagcattgagcatgttttgcgataggtccattatgtcgatcctttttaaccgactcaattgaattg |
212 |
Q |
| |
|
||||||| || ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||| |||| |||| ||||||| |||| ||||||||||| |
|
|
| T |
5161144 |
ccaaatgtcaaattttggaagcaagatggtattgaagcattgaacatgttccgcgataggtccatcatgttgatcttttttaatcgacacaattgaattg |
5161045 |
T |
|
| Q |
213 |
gaatatctccttccaaattgttccctcctaataaaagaacacgtaactctgataacttatccatccagttgggaatttcacatgaaaattttttctcctt |
312 |
Q |
| |
|
|||||||||||||||| || |||| ||||| |||||||||||| |||||||| | ||||| ||||| |||||||||| || ||||||||| |||||| | |
|
|
| T |
5161044 |
gaatatctccttccaagttattccatcctagtaaaagaacacgcaactctgagagattatcaatccaattgggaattttacctgaaaatttgttctccct |
5160945 |
T |
|
| Q |
313 |
caaat |
317 |
Q |
| |
|
||||| |
|
|
| T |
5160944 |
caaat |
5160940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University