View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_30 (Length: 346)
Name: NF21359_low_30
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 103 - 345
Target Start/End: Complemental strand, 54233805 - 54233563
Alignment:
| Q |
103 |
tacttgatcaaacgtttgaaaatgaggaaaaataaaacaaatttttaatagagaaaagttttttcacaactaaaagttgtctaacaccgtatttttatac |
202 |
Q |
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| T |
54233805 |
tacttgatcaaacgtttgaaaatgaggaaaaataaaacaaatttttaatagagaaaagttttttcgcaactaaaagttgtctaacaccgtatttttatac |
54233706 |
T |
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| Q |
203 |
ggttgtcaatctatcttttaatcaaattaacacttacatttattttcatacattgtccccaaagttgtcacattttcataactaactcgcctacctgcta |
302 |
Q |
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| T |
54233705 |
ggttgtcaatctatcttttaatcaaattaacacttacatttattttcatacattgtccccaaagttgtcacattttcataactaactcgcctacctgcta |
54233606 |
T |
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| Q |
303 |
accatcgcaactacgtataaactagcttaacttttcactgatg |
345 |
Q |
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| T |
54233605 |
accattgcaactacgtataaattagcttaacttttcactgatg |
54233563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 54233921 - 54233820
Alignment:
| Q |
18 |
aaaatgaggttttttagtcaaataaagaatgaacatattttggataaaaaatataattatataaaaactcatgaacttataattttacttgatcaaacgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54233921 |
aaaatgaggttttttagtcaaataaagaatgaacatattttggataaaaaatataattatataaaaactcatgaacttataattttacttgatcaaacgt |
54233822 |
T |
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| Q |
118 |
tt |
119 |
Q |
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|| |
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| T |
54233821 |
tt |
54233820 |
T |
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