View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_31 (Length: 340)
Name: NF21359_low_31
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 25710282 - 25709959
Alignment:
| Q |
1 |
tgaaactttcccatgaagattccgtatgctggtagcaaagtgttctccacagactctattacttcttttctaagctcttcatcataaacaagccacatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25710282 |
tgaaactttcccatgaagattccgtatgctggtagcaaagtgttttccacagactctattacttcttttctaagctctttatcataaacaagccacatgg |
25710183 |
T |
|
| Q |
101 |
attgttcactacaaatctcctcgaagtgtatgttgaacaaattgagcttgtctatcaatgactcttgtgtaacacccaactcattgctgtcaaccttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25710182 |
attgttcactacaaatctcctcgaagtgtatgttgaacaaattgagcttgtctatcaatgactcttgtgtaacacccaactcattgctgtcaaccttgag |
25710083 |
T |
|
| Q |
201 |
aaacctgatcaccttactccacgagtttctatgataaagctcaatgtgttgttggatttttgcttggttttctggaaaccaatcatcaccgatatagaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25710082 |
aaacctgatcaccttactccacgagtttctatgataaagctcaatgtgttgttggatttttgcttggttttctggaaaccaatcatcaccgatatagaag |
25709983 |
T |
|
| Q |
301 |
ctagaattccagtgtatcttattt |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
25709982 |
ctagaattccagtgtatcttattt |
25709959 |
T |
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