View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_36 (Length: 312)
Name: NF21359_low_36
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 278
Target Start/End: Original strand, 34361320 - 34361423
Alignment:
| Q |
175 |
gtttattatgttcacacctatccgacacccagacacatgcatccaatggtttttaatacaaaacttactccataaaactactcatgcatgcttgctttgt |
274 |
Q |
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| T |
34361320 |
gtttattatgttcacacctatccgacacccagacacatgcatccaatggtttttaatacaaaacttactccataaaactactaatgcatgcttgctttgt |
34361419 |
T |
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| Q |
275 |
gttc |
278 |
Q |
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|||| |
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| T |
34361420 |
gttc |
34361423 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 34361212 - 34361273
Alignment:
| Q |
67 |
tcatgtttaccatcaggtgcctgtgttactccttataccttcacaactgccattgatccaga |
128 |
Q |
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| T |
34361212 |
tcatgtttaccatcaggtgcctgtgttactccttataccttcacaactgccattgatccaga |
34361273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 12118416 - 12118356
Alignment:
| Q |
72 |
tttaccatcaggtgcctgtgttactccttataccttcacaactgccattgatccagagaag |
132 |
Q |
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| T |
12118416 |
tttaccatcacgtgcctgtgttcctccttataccatcacaactgccattgatctagagaag |
12118356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 37166992 - 37167052
Alignment:
| Q |
72 |
tttaccatcaggtgcctgtgttactccttataccttcacaactgccattgatccagagaag |
132 |
Q |
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| T |
37166992 |
tttaccatcacgtgcctgtgttcctccttataccatcacaactgccattgatctagagaag |
37167052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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