View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_37 (Length: 309)
Name: NF21359_low_37
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 8847006 - 8846713
Alignment:
| Q |
1 |
tcatcagtctgatcaatgctcgtgtcagttttatgtaaatttctacgaggatcaaggttcacttggtagaaatataaaaacactcaataaggaggtttat |
100 |
Q |
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| T |
8847006 |
tcatgagtctgatcaatgctcgtgtcagttttatgtaaatttctacgaggatcaaggttcacttggtagaaatataaaaacactcaataaggaggtttat |
8846907 |
T |
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| Q |
101 |
gcaactggaatagatcgaattttcatcctccaaaggcttcaacataatagttgtgaaggcttaataaaaaatagtgatagttctgaagtggttaagcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8846906 |
gcaactggaatagatcgaattttcatcctccaaaggcttcaacataatagttgtgaaggcttaataaaaaatagtgatagttctgaagtggttaagcctt |
8846807 |
T |
|
| Q |
201 |
ataggtgggattcatctgaagattgctcctcattatcagagtctagactaatcttggggagatttttatctgatctttcgtggttcgttacaac |
294 |
Q |
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| T |
8846806 |
ataggtgggattcatctgaagattgctcctcattatcagagtctagactaatcttggggagatttttatctgatctttcgtggttcgttacaac |
8846713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 92 - 279
Target Start/End: Complemental strand, 8820936 - 8820749
Alignment:
| Q |
92 |
gaggtttatgcaactggaatagatcgaattttcatcctccaaaggcttcaacataatagttgtgaaggcttaataaaaaatagtgatagttctgaagtgg |
191 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||| | | | ||| |||| |||| | |
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| T |
8820936 |
gaggtttatgtaactggaatagatcgagttttcatcctccaaaggcttcaacataatacttttgaagtcttaataaaacagaataataattctaaagttg |
8820837 |
T |
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| Q |
192 |
ttaagccttataggtgggattcatctgaagattgctcctcattatcagagtctagactaatcttggggagatttttatctgatctttc |
279 |
Q |
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| T |
8820836 |
ttatgctttgtagctgggattcatcacaagatttctcttcattattgcagtctagattaatcatgggtaaatttttatctgatttttc |
8820749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 32252889 - 32252618
Alignment:
| Q |
11 |
gatcaatgctcgtgtcagttttatgtaaatttctacgaggatcaaggttcacttggtagaaatataaaaacactcaataaggaggtttatgcaactggaa |
110 |
Q |
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|||||||| || ||||| ||||||||||| || || || ||||||||||||||||||| | | ||||||| || ||||| |||||| |||||| ||||| |
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| T |
32252889 |
gatcaatgttcatgtcaattttatgtaaacttttatgacgatcaaggttcacttggtacagaggtaaaaactcttaataaagaggttaatgcaattggaa |
32252790 |
T |
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| Q |
111 |
tagatcgaattttcatcctccaaaggcttcaacataatagttgtgaaggcttaataaaaaatagtgatagttctgaagtggttaagccttataggtggga |
210 |
Q |
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| T |
32252789 |
tggatcaaattttcatcctccaaaggcttcaacataatacttgtgaaggcttgttaaaagaaaatgatacctctgaa---attaagccttataggtggga |
32252693 |
T |
|
| Q |
211 |
ttcatctgaagattgctcctcattatcagagtctagactaatcttggggagatttttatctgatctttcgtggtt |
285 |
Q |
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| T |
32252692 |
ttcatcagaagattgctcttcattatcacaatctagattacttgttgggaaattttcatctgatctttcgtggtt |
32252618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 32229836 - 32229699
Alignment:
| Q |
86 |
aataaggaggtttatgcaactggaatagatcgaattttcatcctccaaaggcttcaacataatagttgtgaaggcttaataaaaaatagtgatagttctg |
185 |
Q |
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||||| || ||||||||| ||||| |||| |||||||||||||||||||||||| |||||| |||||||||||| || | || | |||||| || | |
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| T |
32229836 |
aataaagaagtttatgcatttggaaaagatacaattttcatcctccaaaggcttcattataatacttgtgaaggcttgttatataa-aatgatagctcgg |
32229738 |
T |
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| Q |
186 |
aagtggttaagccttataggtgggattcatctgaagattgct |
227 |
Q |
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| T |
32229737 |
aa---gttaagccttatagatgggattcatcaaaagattgct |
32229699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 11415712 - 11415853
Alignment:
| Q |
8 |
tctgatcaatgctcgtgtcagttttatgtaaatttctacgaggatcaaggttcacttggtagaaatataaaaacactcaataaggaggtttatgcaactg |
107 |
Q |
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|||||||||| || ||||| ||| |||||||||||||||| ||||||||||||||||||| ||| ||||||| || ||||| ||||| ||| || || |
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| T |
11415712 |
tctgatcaatattcatgtcaatttcatgtaaatttctacgatgatcaaggttcacttggtacaaagttaaaaactctgaataaagaggtcaatgtaattg |
11415811 |
T |
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| Q |
108 |
gaatagatcgaattttcatcctccaaaggcttcaacataata |
149 |
Q |
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| T |
11415812 |
gaatatatcaaattttcatcctccaaagactttaacaaaata |
11415853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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