View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_47 (Length: 251)
Name: NF21359_low_47
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_47 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 10879360 - 10879596
Alignment:
| Q |
15 |
aagagatgtaggtatacttagttcaagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaagagttgtcgatgttgtgttggacct |
114 |
Q |
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| T |
10879360 |
aagagatgtaggtatacttagttcaagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaaaagctgttgattttgtgttgtacct |
10879459 |
T |
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| Q |
115 |
gactattcggcatgtgggttacatcttctattacaaggaaaatgttagtaaactaaacagtctagttgagaagctaattcttgaaagagagagcctggaa |
214 |
Q |
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| T |
10879460 |
gactattcggcatgtgggttacatcttctattacaaggaaaatgttagtgaactaaacagtctagttgagaagctaattcttgaaagagagagcctggaa |
10879559 |
T |
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| Q |
215 |
cgtcgagtagataaagctgaggataatctaggaataa |
251 |
Q |
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| T |
10879560 |
catcgagtagataaagctgaggataatctaggaataa |
10879596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 10847968 - 10848200
Alignment:
| Q |
15 |
aagagatgtaggtatacttagttcaagaaaattgagaagaaagtatggagcctgcatcctccaaatgtgtagaaagagttgtcgatgttgtgttggacct |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||| |||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||| |
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| T |
10847968 |
aagagatgtaggtatacttagttcaagaaaatcgagaggaa-gtatggagtatgcatcc---aaatttgtagaaagagctgtcgatgttgtgttggacct |
10848063 |
T |
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| Q |
115 |
gactattcggcatgtgggttacatcttctattacaaggaaaatgttagtaaactaaacagtctagttgagaagctaattcttgaaagagagagcctggaa |
214 |
Q |
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| T |
10848064 |
gactgttcggcatgtgggttacatcttctattacaaggacaatgttagtgaactaaacaatcttgttgagaagctaagtcttgaaagaaagaggctggaa |
10848163 |
T |
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| Q |
215 |
cgtcgagtagataaagctgaggataatctaggaataa |
251 |
Q |
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| T |
10848164 |
catcgagtagatgaagctgaggataatctaggaataa |
10848200 |
T |
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