View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21359_low_49 (Length: 240)

Name: NF21359_low_49
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21359_low_49
NF21359_low_49
[»] chr2 (3 HSPs)
chr2 (1-75)||(26305987-26306060)
chr2 (71-135)||(26305894-26305958)
chr2 (161-223)||(26305836-26305898)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26306060 - 26305987
Alignment:
Q  1 acggtgtttatctcagaggtaaaaactcgtttatgttccatattttcattcaatttgttctgtactggctctgat 75  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26306060 acggtgtttatctcagaggtaaaa-ctcgtttatgttccatattttcattcaatttgttctgtactggctctgat 26305987  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 26305958 - 26305894
Alignment:
Q  71 ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26305958 ctgatcgtaatgtttgttcttaaatgtgtattctgtcacacatagttcaaaactgcggtacacaa 26305894  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 26305898 - 26305836
Alignment:
Q  161 cacaatcatatttgtagctgcatttgtcagcattttagaactatactgtcacaattgattctt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  26305898 cacaatcatatttgtagctgcatttgtcagcattttagaactatgctgtcacaattgcttctt 26305836  T

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