View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_5 (Length: 608)
Name: NF21359_low_5
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_5 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 20 - 595
Target Start/End: Original strand, 46230668 - 46231233
Alignment:
| Q |
20 |
gacttaccgtttatgaagtgggaaatctatttttaaattcattaaggaatctggaagaaaataatcttgggagtagcaagggcttatctcaagccggtat |
119 |
Q |
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| T |
46230668 |
gacttaccgtttatgaagtgggaaatctatttttaaattcattaaggaatctggaagaaaataatttgtggagtagcaagggcttatctcaagccggtat |
46230767 |
T |
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| Q |
120 |
gagaagttctcatcaaatcggtgatgcaatttattcctccgtatgttatgagcannnnnnnnnnnnnnnnnnnnattaaacgttgtcctctcttattgat |
219 |
Q |
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| T |
46230768 |
gagaagttctcatcaaatcggtgatgcaatttattcctccgtatgttatgagcatttttttttttt--------attaaacgttgtcctctcttagtgat |
46230859 |
T |
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| Q |
220 |
gaaattgataagatgttgaattctttctggtgggggttataatagagagtaatctaaaggtattcatcggctttcctgggattgtttaaccatgcacaaa |
319 |
Q |
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| T |
46230860 |
gaaattgataagatgttgaattctttctggtgggg-ttataatagagaataatctaaaggtattc-tcggctttcctgggattgtttaaccatgcacaaa |
46230957 |
T |
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| Q |
320 |
aataatgttgaattcttttccaggaagagtttgagtggttttaactacgcaatgtttggtaaacaagcttgaaattttatgactaattcagtaagtttgg |
419 |
Q |
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| T |
46230958 |
aataatgttgaattcttttccaggaagagtttgagtggttttaactacgcaatgtttggtaaacaagcttgaaattttatgactaattcagaaagtttgg |
46231057 |
T |
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| Q |
420 |
tcactagactcttcgaagctagatatttttcagaaagcaactttcttgaatgtaacattggtcataatccaagctatgtttggccaagcatatggagtgc |
519 |
Q |
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| T |
46231058 |
tcactagactcttcaaagctagatatttttcataaagcaactttcttgaatgcaacattggtcataatccaagctatgtttggccaagcatatggagtgc |
46231157 |
T |
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| Q |
520 |
aaaatttgttgtttgcaaaggacataaatggtgtattgacacgggtcatgatgggagcataattggttatatgatg |
595 |
Q |
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| T |
46231158 |
aaaatttgttgtttgcaaaggacataaatggtgtattgacacgggtcatgatgggagcataattggttatatgatg |
46231233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 53686 - 53648
Alignment:
| Q |
216 |
tgatgaaattgataagatgttgaattctttctggtgggg |
254 |
Q |
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| T |
53686 |
tgatgaaattgaaaaaatgttgaattctttctggtgggg |
53648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 8969965 - 8969928
Alignment:
| Q |
217 |
gatgaaattgataagatgttgaattctttctggtgggg |
254 |
Q |
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| T |
8969965 |
gatgaaattgagaagatgatgaattctttctggtgggg |
8969928 |
T |
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