View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21359_low_53 (Length: 229)
Name: NF21359_low_53
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_53 |
 | |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 22205043 - 22205269
Alignment:
| Q |
3 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagta |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22205043 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagta |
22205142 |
T |
|
| Q |
103 |
aaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22205143 |
aaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgta |
22205242 |
T |
|
| Q |
203 |
cggcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
22205243 |
cggcctcttcatgtgtcgaggtgacct |
22205269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20086122 - 20085894
Alignment:
| Q |
1 |
cgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
20086122 |
cgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcctataattgctcaagaaacaacag |
20086023 |
T |
|
| Q |
101 |
taaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtg |
200 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||| || | | || |||||||| ||||||||| |
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|
| T |
20086022 |
tacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaaaaattttatactgttaaagtggatgaaatggtg |
20085923 |
T |
|
| Q |
201 |
tacggcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
20085922 |
tacggcctcttcttgtgtcgaggtgacct |
20085894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 4 - 229
Target Start/End: Original strand, 24385256 - 24385481
Alignment:
| Q |
4 |
caaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagtaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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|
| T |
24385256 |
caaatgagcttgttcctcaaacaaatgattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgctcaagaaaccacaatat |
24385355 |
T |
|
| Q |
104 |
aatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgtac |
203 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| | | |||||||||||||||||||||||| |
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|
| T |
24385356 |
aatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcaaaaaattctatactgtaaaagtggaagaaatggtgtac |
24385455 |
T |
|
| Q |
204 |
ggcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
24385456 |
ggcctcttcatgtgtcgaggtgacct |
24385481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 20238031 - 20237807
Alignment:
| Q |
5 |
aaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagtaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||||||||| |||||||| ||||||||||||||| | |
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|
| T |
20238031 |
aaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgcccaagaaaccacagtaca |
20237932 |
T |
|
| Q |
105 |
atcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgtacg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| | | ||||||||||||| |||||||| |
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|
| T |
20237931 |
atcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatattgctaaagtggaagaaaaggtgtacg |
20237832 |
T |
|
| Q |
205 |
gcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
20237831 |
gcctcttcttgtgtcgaggtgacct |
20237807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 22132015 - 22131791
Alignment:
| Q |
5 |
aaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagtaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
22132015 |
aaatgagcttgttcctcaaacaaatgattcaaaacaagattctaattttacacaagatccagtttatctttccgataattgcccaagaaaccacagtaca |
22131916 |
T |
|
| Q |
105 |
atcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgtacg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| | | ||||||||||||| |||||||| |
|
|
| T |
22131915 |
atcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatattgctaaagtggaagaaaaggtgtacg |
22131816 |
T |
|
| Q |
205 |
gcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
|||||||| |||||||||||||||| |
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|
| T |
22131815 |
gcctcttcttgtgtcgaggtgacct |
22131791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 20205440 - 20205217
Alignment:
| Q |
3 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagta |
102 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||| | |||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20205440 |
ccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaaca |
20205341 |
T |
|
| Q |
103 |
aaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgta |
202 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | ||| ||| || || | | |||||||||||||| ||||| |
|
|
| T |
20205340 |
caatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgta |
20205241 |
T |
|
| Q |
203 |
cggcctcttcatgtgtcgaggtga |
226 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
20205240 |
tggtctcttcatgtgtcgaggtga |
20205217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 22099463 - 22099240
Alignment:
| Q |
3 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagta |
102 |
Q |
| |
|
||||||||||| | ||||| ||||||| |||| | |||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22099463 |
ccaaatgagctagctcctcgaacaaatgattccaaacaagattctaaactttcagaagaatcattttatctttcctataattgctcaagaaaccacaaca |
22099364 |
T |
|
| Q |
103 |
aaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgta |
202 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||||||||| || |||||||| | ||| ||| || || | | |||||||||||||| ||||| |
|
|
| T |
22099363 |
caatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccaccatcggcaaaaaatttcatagccttaaagtggaagaaattgtgta |
22099264 |
T |
|
| Q |
203 |
cggcctcttcatgtgtcgaggtga |
226 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
22099263 |
tggtctcttcatgtgtcgaggtga |
22099240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 157
Target Start/End: Complemental strand, 21972004 - 21971847
Alignment:
| Q |
3 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagatt---ttcacaagatccattttatctttcctataattgctcaagaaaccaca |
99 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| | |||||||||| | | |||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21972004 |
ccaaatgagcttgctcctcaaacaaatgattccatacaagattctaaaatactttcagaagatccattttatctttcctataattgctcaagaaattaca |
21971905 |
T |
|
| Q |
100 |
gtaaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac |
157 |
Q |
| |
|
|| ||||||| |||||||| ||||| ||||||| |||||||||| || |||||||| |
|
|
| T |
21971904 |
atacaatcactgacaaaaacatcaaactacttctgtcttatttgttgtcgaacgccac |
21971847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16071 - 15844
Alignment:
| Q |
1 |
cgccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
16071 |
cgccaaatgagcttgttcctcaaacaaatcattcaaaccaagattctagattttcacaagatccaatttatctttcctataattgctcaagaaacaacag |
15972 |
T |
|
| Q |
101 |
taaaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtg |
200 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15971 |
tacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac-aatggcagaaatttccaaaaagtaaaagtggaagaaatggtg |
15873 |
T |
|
| Q |
201 |
tacggcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15872 |
tacggcctcttcatgtgtcgaggtgacct |
15844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 47869 - 48095
Alignment:
| Q |
3 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagta |
102 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47869 |
ccaaatgagcttgttcctcaaacaaaacattcaaaacaagattctagattttcacaagatccaatttatctttcctataattgcccaagaaaccacagta |
47968 |
T |
|
| Q |
103 |
aaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgta |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||||||||||| |||| |
|
|
| T |
47969 |
caatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatgctgta |
48068 |
T |
|
| Q |
203 |
cggcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48069 |
tggcctcttcatgtgtcgaggtgacct |
48095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 5396 - 5622
Alignment:
| Q |
3 |
ccaaatgagcttgttcctcaaacaaatcattcaacccaagattctagattttcacaagatccattttatctttcctataattgctcaagaaaccacagta |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5396 |
ccaaatgagcttgttcctcaaacaaactattcaaaacaagatactagattttcaaaagatcccttttatctttcctataattgctcaagaaaccaaagta |
5495 |
T |
|
| Q |
103 |
aaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgta |
202 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | || ||||||||||||| | |||| |
|
|
| T |
5496 |
caatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaacgctgta |
5595 |
T |
|
| Q |
203 |
cggcctcttcatgtgtcgaggtgacct |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5596 |
tggcctcttcatgtgtcgaggtgacct |
5622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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