View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_55 (Length: 228)
Name: NF21359_low_55
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_55 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 443724 - 443507
Alignment:
| Q |
11 |
catcatcactgtctgaatcatcaatttctataatctgcttcttgttctcaagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacata |
110 |
Q |
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| T |
443724 |
catcatcactgtctgaatcatcaatttctataatctgcttcttgttctcaagtagaaaagataaagcttctgtcttgatcctaagaaataaaaatacata |
443625 |
T |
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| Q |
111 |
atcataattaggcttaaactacctaaggtaagattttaaaacatgcatgtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcattt |
210 |
Q |
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| T |
443624 |
atcataattaggcttaaactacctaaggtaagattttaaaacatgcatgtaaccaaacaaagaaaacgaatgataccccatagcggtgcaaattgcattt |
443525 |
T |
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| Q |
211 |
gctgttttttcatcaaac |
228 |
Q |
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| T |
443524 |
gctgttttttcatcaaac |
443507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 465379 - 465414
Alignment:
| Q |
193 |
gcggtgcaaattgcatttgctgttttttcatcaaac |
228 |
Q |
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| T |
465379 |
gcggtgcaaattgcatttgctgttttttcatcaaac |
465414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 444754 - 444722
Alignment:
| Q |
196 |
gtgcaaattgcatttgctgttttttcatcaaac |
228 |
Q |
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| T |
444754 |
gtgcaaatagcatttgctgttttttcatcaaac |
444722 |
T |
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