View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21359_low_7 (Length: 605)

Name: NF21359_low_7
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21359_low_7
NF21359_low_7
[»] chr4 (33 HSPs)
chr4 (153-397)||(4622952-4623189)
chr4 (141-308)||(4598518-4598685)
chr4 (470-605)||(4622740-4622875)
chr4 (152-308)||(25015751-25015907)
chr4 (1-70)||(4598789-4598858)
chr4 (152-308)||(25037031-25037187)
chr4 (470-605)||(4634232-4634367)
chr4 (470-605)||(9661802-9661937)
chr4 (484-605)||(16991835-16991956)
chr4 (484-605)||(28588524-28588646)
chr4 (506-605)||(41486561-41486659)
chr4 (506-600)||(3673609-3673702)
chr4 (477-601)||(11817028-11817152)
chr4 (1-60)||(4623302-4623361)
chr4 (509-600)||(23067883-23067973)
chr4 (484-596)||(1645980-1646092)
chr4 (484-548)||(1657656-1657721)
chr4 (489-605)||(14542542-14542658)
chr4 (477-596)||(3168996-3169115)
chr4 (505-600)||(5388500-5388594)
chr4 (510-605)||(7242799-7242893)
chr4 (508-547)||(44021652-44021691)
chr4 (506-549)||(46729004-46729047)
chr4 (509-600)||(52555756-52555846)
chr4 (1-49)||(25016030-25016078)
chr4 (470-605)||(37869447-37869581)
chr4 (484-546)||(54420800-54420863)
chr4 (555-605)||(28990333-28990382)
chr4 (555-605)||(38434633-38434682)
chr4 (487-600)||(47465884-47465997)
chr4 (512-545)||(4959664-4959697)
chr4 (509-549)||(18935648-18935688)
chr4 (470-548)||(43156725-43156805)
[»] chr2 (32 HSPs)
chr2 (153-308)||(18805805-18805960)
chr2 (487-605)||(6089859-6089977)
chr2 (470-605)||(3390381-3390516)
chr2 (470-605)||(25771394-25771529)
chr2 (470-605)||(40125338-40125473)
chr2 (506-605)||(37883639-37883737)
chr2 (484-605)||(25623075-25623196)
chr2 (470-605)||(27024169-27024304)
chr2 (509-600)||(7640391-7640481)
chr2 (1-60)||(18805642-18805701)
chr2 (476-605)||(41841904-41842034)
chr2 (478-547)||(3464916-3464986)
chr2 (505-605)||(16879995-16880088)
chr2 (484-605)||(10589001-10589123)
chr2 (477-547)||(25237413-25237484)
chr2 (484-594)||(25516457-25516567)
chr2 (484-594)||(27191376-27191486)
chr2 (484-594)||(27841190-27841300)
chr2 (506-605)||(42105782-42105880)
chr2 (484-594)||(43566840-43566948)
chr2 (478-535)||(31263053-31263111)
chr2 (476-605)||(34479911-34480040)
chr2 (484-592)||(41176825-41176934)
chr2 (484-565)||(44167778-44167860)
chr2 (505-546)||(15674062-15674103)
chr2 (509-601)||(5071404-5071495)
chr2 (506-594)||(26491289-26491376)
chr2 (484-597)||(3602948-3603061)
chr2 (506-605)||(5930409-5930507)
chr2 (506-605)||(29812645-29812743)
chr2 (512-545)||(9715634-9715667)
chr2 (505-546)||(17037737-17037778)
[»] chr7 (26 HSPs)
chr7 (506-605)||(47749720-47749818)
chr7 (470-605)||(40775216-40775351)
chr7 (506-605)||(23732423-23732521)
chr7 (512-597)||(25855258-25855342)
chr7 (506-605)||(8319300-8319399)
chr7 (484-594)||(24470358-24470468)
chr7 (484-594)||(24475306-24475416)
chr7 (505-548)||(28015341-28015384)
chr7 (509-600)||(30992858-30992948)
chr7 (479-546)||(41748589-41748657)
chr7 (470-605)||(10250511-10250645)
chr7 (484-605)||(33530498-33530617)
chr7 (513-600)||(43807185-43807271)
chr7 (512-605)||(47156388-47156478)
chr7 (506-548)||(24045318-24045360)
chr7 (506-600)||(29804711-29804804)
chr7 (506-547)||(16263373-16263414)
chr7 (513-605)||(13008703-13008793)
chr7 (484-594)||(8611663-8611773)
chr7 (477-605)||(23177612-23177740)
chr7 (484-594)||(49166890-49167000)
chr7 (507-605)||(35135213-35135310)
chr7 (487-548)||(38649444-38649506)
chr7 (506-605)||(35141781-35141881)
chr7 (484-545)||(43483558-43483619)
chr7 (512-605)||(44681454-44681545)
[»] chr6 (13 HSPs)
chr6 (476-605)||(32457601-32457730)
chr6 (509-602)||(19759777-19759869)
chr6 (470-605)||(20844956-20845092)
chr6 (470-605)||(16913277-16913412)
chr6 (508-605)||(548895-548991)
chr6 (506-599)||(4663856-4663948)
chr6 (506-605)||(12576508-12576606)
chr6 (508-605)||(13234138-13234233)
chr6 (470-598)||(15128186-15128313)
chr6 (506-597)||(7049233-7049322)
chr6 (484-546)||(33194568-33194631)
chr6 (507-600)||(32804281-32804374)
chr6 (485-545)||(34020582-34020643)
[»] chr3 (19 HSPs)
chr3 (484-605)||(20201088-20201209)
chr3 (484-605)||(20203270-20203391)
chr3 (470-605)||(1165426-1165561)
chr3 (487-605)||(50460160-50460276)
chr3 (470-605)||(21803479-21803614)
chr3 (476-595)||(1220255-1220374)
chr3 (470-605)||(43029632-43029767)
chr3 (484-594)||(50519753-50519863)
chr3 (484-605)||(43839548-43839667)
chr3 (477-605)||(25374100-25374227)
chr3 (490-600)||(1806495-1806605)
chr3 (470-548)||(22844000-22844079)
chr3 (484-570)||(41882472-41882559)
chr3 (470-548)||(42106060-42106139)
chr3 (476-605)||(34766936-34767063)
chr3 (484-605)||(35501789-35501909)
chr3 (506-597)||(20251637-20251728)
chr3 (470-548)||(913404-913483)
chr3 (484-565)||(22286818-22286900)
[»] chr8 (17 HSPs)
chr8 (477-605)||(9269977-9270105)
chr8 (487-605)||(9992631-9992749)
chr8 (484-605)||(13864322-13864443)
chr8 (477-605)||(23766698-23766824)
chr8 (484-605)||(31874047-31874168)
chr8 (484-605)||(36545811-36545932)
chr8 (470-605)||(15665488-15665623)
chr8 (506-600)||(14530943-14531036)
chr8 (489-605)||(44295284-44295400)
chr8 (470-545)||(16937428-16937504)
chr8 (506-548)||(10042747-10042789)
chr8 (506-600)||(27534434-27534527)
chr8 (509-600)||(8054843-8054933)
chr8 (506-548)||(37658952-37658994)
chr8 (513-605)||(7269494-7269585)
chr8 (556-600)||(32104873-32104916)
chr8 (488-532)||(39067816-39067860)
[»] chr5 (20 HSPs)
chr5 (470-605)||(31645778-31645913)
chr5 (477-605)||(4070512-4070638)
chr5 (470-605)||(6887208-6887343)
chr5 (484-569)||(34893981-34894067)
chr5 (476-605)||(15710495-15710626)
chr5 (484-594)||(28618567-28618677)
chr5 (476-595)||(41988139-41988258)
chr5 (506-605)||(19646071-19646169)
chr5 (470-548)||(33486656-33486735)
chr5 (484-605)||(9034978-9035099)
chr5 (507-548)||(29310435-29310476)
chr5 (513-597)||(2415393-2415476)
chr5 (509-600)||(4726963-4727053)
chr5 (506-548)||(41554472-41554514)
chr5 (166-250)||(30363051-30363135)
chr5 (476-605)||(41357993-41358123)
chr5 (555-605)||(32390677-32390726)
chr5 (477-548)||(8812238-8812310)
chr5 (556-600)||(8957247-8957290)
chr5 (506-546)||(37424979-37425019)
[»] chr1 (22 HSPs)
chr1 (476-605)||(38646539-38646668)
chr1 (470-605)||(22344942-22345077)
chr1 (470-545)||(27469821-27469897)
chr1 (507-605)||(5832220-5832317)
chr1 (484-600)||(6212921-6213037)
chr1 (478-600)||(13691793-13691916)
chr1 (470-605)||(14717273-14717407)
chr1 (512-600)||(44562784-44562871)
chr1 (476-563)||(52839378-52839466)
chr1 (510-605)||(630815-630909)
chr1 (527-605)||(8893300-8893377)
chr1 (509-600)||(21326462-21326552)
chr1 (506-605)||(35077920-35078018)
chr1 (505-547)||(44514077-44514119)
chr1 (506-568)||(52839507-52839569)
chr1 (484-548)||(30853869-30853934)
chr1 (506-597)||(17579754-17579844)
chr1 (531-605)||(15276480-15276553)
chr1 (484-548)||(33703595-33703660)
chr1 (535-605)||(40992349-40992420)
chr1 (533-605)||(23257101-23257172)
chr1 (525-605)||(49651840-49651919)
[»] scaffold0045 (1 HSPs)
scaffold0045 (484-605)||(9678-9799)
[»] scaffold0012 (1 HSPs)
scaffold0012 (470-605)||(244583-244720)
[»] scaffold0340 (1 HSPs)
scaffold0340 (515-605)||(11807-11896)
[»] scaffold1294 (1 HSPs)
scaffold1294 (470-545)||(729-805)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 2e-91; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 153 - 397
Target Start/End: Complemental strand, 4623189 - 4622952
Alignment:
Q  153 ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacactgtacgttttggaattaactttgttgattatg 252  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  4623189 ggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttgaatggaatgacggatacactgtgcgttttggaattaactttgttgattatg 4623090  T
Q  253 agaatg---atcttaaaagacaccctaagctctctgcccgttggtttaggaagtttcttcaacataacagaattattggttgatgcatgtcatcatatgt 349  Q
    ||||||   |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||          ||||    
T  4623089 agaatggtcatcttacaagacaccctaagctctctgcccggtggtttaggaagtttcttcaacataatagaattattggttgatgc----------atgt 4623000  T
Q  350 catcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4622999 catcatgaccaccaataatactgtgtgagcttggtcattaatcttgaa 4622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 141 - 308
Target Start/End: Complemental strand, 4598685 - 4598518
Alignment:
Q  141 gtgtgtaggagtggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacactgtacgttttggaattaact 240  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  4598685 gtgtgtaggcgtggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacaccgtgcgttttggaattaact 4598586  T
Q  241 ttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4598585 ttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaaatttctt 4598518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 4622875 - 4622740
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctcttt 569  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  4622875 cgtcaccaaaactctagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacctctgtatctcgtttttctcttt 4622776  T
Q  570 cttttcttattaaaataagtgattttcacatttatt 605  Q
    | ||||||||||||||||||||||| ||||||||||    
T  4622775 cctttcttattaaaataagtgatttccacatttatt 4622740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 25015907 - 25015751
Alignment:
Q  152 tggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacactgtacgttttggaattaactttgttgattat 251  Q
    ||||||||| || |||||||||||||||||||| |||||||||||||||||||||   |  |||||||||  |||||||||||| |||| |||| ||||     
T  25015907 tggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttgaatggctggctggatacactagacgttttggaatgaactatgttaattac 25015808  T
Q  252 gagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 308  Q
     |  || |||||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  25015807 aatgataatcttaaaagacaccaaaagctctctgcccattggtttaggaactttctt 25015751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4598858 - 4598789
Alignment:
Q  1 agaattgattactattatcgtcatctatattatgtttcttctgcaatcaggtagcacccttttacttcta 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4598858 agaattgactactattatcgtcatctatattatgtttcttctgcaatcaggtagcacccttttacttcta 4598789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 25037187 - 25037031
Alignment:
Q  152 tggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacactgtacgttttggaattaactttgttgattat 251  Q
    ||||||||| || |||||||||||||||||||| ||||| |||||||||||||||   | ||||||||    ||||||||||||||||||||| |||||     
T  25037187 tggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttgaatggctggccggatacagaagacgttttggaattaactttgtagattac 25037088  T
Q  252 gagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 308  Q
     |  || |||||||||||||||  ||||| ||||||| |||||||||||| ||||||    
T  25037087 aaagataatcttaaaagacaccaaaagctttctgcccattggtttaggaattttctt 25037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 4634232 - 4634367
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||| | |  || |||||||  ||    
T  4634232 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaacttgtttttccttt 4634331  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  4634332 tccctt-ttattgaaataagtgattttcacatctatt 4634367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 9661802 - 9661937
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||| | |  || |||||||| ||    
T  9661802 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttctttt 9661901  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  9661902 tccctt-ttattgaaataagtgattttcacatctatt 9661937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 484 - 605
Target Start/End: Original strand, 16991835 - 16991956
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |    
T  16991835 tagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttttgacccaaaatcacccatctaactcgtttttctatttccctt-ttattga 16991933  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  16991934 aataagtgattttcacatctatt 16991956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 605
Target Start/End: Original strand, 28588524 - 28588646
Alignment:
Q  484 tagtttcttcttcttcatcaataa-agaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| || | ||| |||||||||| ||||||||||||| |||||||||||| | |  ||||||||||||||||  || ||||| |    
T  28588524 tagtttcttctccttcatccatcatagaagggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttccctttttattga 28588623  T
Q  583 aataagtgattttcacatttatt 605  Q
    ||||| |||||||| ||| ||||    
T  28588624 aataaatgattttcgcatctatt 28588646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 41486561 - 41486659
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |  ||||||||||||||||  ||  |||| ||||||| ||||||||||| ||||    
T  41486561 aaagaggggttatttagggtcaatttttgatccaaaatcacccctctaactcgtttttctctttccctt-atattgaaataagagattttcacatctatt 41486659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 506 - 600
Target Start/End: Original strand, 3673609 - 3673702
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    |||||||||||||||| ||||||||||||| || ||||||||| | |   ||||||||||| ||| ||| ||||| |||||||||||||||||||    
T  3673609 aaagaggggtgatttagggtcaatttttgaccccaaatcacccctctaaatcgtttttctccttccttt-ttatttaaataagtgattttcacat 3673702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 477 - 601
Target Start/End: Original strand, 11817028 - 11817152
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttc 575  Q
    ||||||||| |||||||||||||||| || ||||||||||| |||| ||| || |||||| |||||||||||| | |   ||||||||||| |||  ||     
T  11817028 aaaactttaatttcttcttcttcatccatcaaagaggggtggtttagggttaagttttgacccaaaatcacccctctacatcgtttttctccttccctt- 11817126  T
Q  576 ttattaaaataagtgattttcacatt 601  Q
    || || ||||||||||||||||||||    
T  11817127 ttgtttaaataagtgattttcacatt 11817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4623361 - 4623302
Alignment:
Q  1 agaattgattactattatcgtcatctatattatgtttcttctgcaatcaggtagcaccct 60  Q
    ||||||||||||| ||||||||||||||||||| |||  |||||||| ||||||||||||    
T  4623361 agaattgattacttttatcgtcatctatattatcttttatctgcaatgaggtagcaccct 4623302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 23067973 - 23067883
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||| ||||||||||||| || ||||||||| | |  ||||||||||| ||||  || ||||| |||||||||||||||||||    
T  23067973 gaggggtgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttccctt-ttattgaaataagtgattttcacat 23067883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 596
Target Start/End: Complemental strand, 1646092 - 1645980
Alignment:
Q  484 tagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    |||||||||||||||||| ||  |||||| | ||||||| ||| |||| |||| |||||||||||| | |  ||||||||||||||||| || ||||| |    
T  1646092 tagtttcttcttcttcattcaccaaagagagatgatttagggttaattgttgacccaaaatcacccctctaactcgtttttctctttctctt-ttattga 1645994  T
Q  583 aataagtgattttc 596  Q
    ||||| ||||||||    
T  1645993 aataaatgattttc 1645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 1657721 - 1657656
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| ||||||||||||    
T  1657721 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcaccc 1657656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 605
Target Start/End: Complemental strand, 14542658 - 14542542
Alignment:
Q  489 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataa 587  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||| |  | |  || |||||||  |||| ||| ||||| ||||||    
T  14542658 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttttccttttccttt-ttattgaaataa 14542560  T
Q  588 gtgattttcacatttatt 605  Q
    ||||||||||||| ||||    
T  14542559 gtgattttcacatctatt 14542542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 477 - 596
Target Start/End: Original strand, 3168996 - 3169115
Alignment:
Q  477 aaaactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttc 575  Q
    |||||| |||||| ||||||||||| ||  |||||| |||||||||  ||||||| |||| |||||||||||| | |  ||||||||| ||||||| ||     
T  3168996 aaaactctagttttttcttcttcattcaccaaagagaggtgatttagagtcaattattgacccaaaatcacccctctaactcgtttttttctttctctt- 3169094  T
Q  576 ttattaaaataagtgattttc 596  Q
    ||||| |||||| ||||||||    
T  3169095 ttattgaaataaatgattttc 3169115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 505 - 600
Target Start/End: Original strand, 5388500 - 5388594
Alignment:
Q  505 taaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||||||| ||||||||||||| |  ||||||||| | |   ||||||||||| |||   ||||||| |||||||||||||||||||    
T  5388500 taaagaggggtgatttagggtcaatttttgaactcaaatcacccctctaaatcgtttttctccttc-cctcttatttaaataagtgattttcacat 5388594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 605
Target Start/End: Complemental strand, 7242893 - 7242799
Alignment:
Q  510 aggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||| |||||| ||||||||||||| ||||||||||| || |  || |||||||||||| || | ||||| ||||||| ||||||||||| ||||    
T  7242893 aggggcgatttagggtcaatttttgacccaaaatcacctttctaacttgtttttctcttt-ttattttattgaaataagcgattttcacatctatt 7242799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 508 - 547
Target Start/End: Complemental strand, 44021691 - 44021652
Alignment:
Q  508 agaggggtgatttaaggtcaatttttgatccaaaatcacc 547  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  44021691 agaggggtggtttaaggtcaatttttgatccaaaatcacc 44021652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 549
Target Start/End: Complemental strand, 46729047 - 46729004
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccct 549  Q
    |||||||||||||||| ||||||||||||| |||||||||||||    
T  46729047 aaagaggggtgatttagggtcaatttttgacccaaaatcaccct 46729004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 52555846 - 52555756
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||| || |||||||||| |||||||||||  | |  ||||||||||| ||| | || ||||| |||||||||||||||||||    
T  52555846 gaggggtgatttagggacaatttttgacccaaaatcacctctctaactcgtttttctatttatctt-ttattgaaataagtgattttcacat 52555756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25016078 - 25016030
Alignment:
Q  1 agaattgattactattatcgtcatctatattatgtttcttctgcaatca 49  Q
    ||||||||||||| |||||| ||||| ||||||||||| ||||||||||    
T  25016078 agaattgattacttttatcgccatctttattatgtttcatctgcaatca 25016030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 37869581 - 37869447
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || ||||||  |||||||| |||||||| || | ||||||||| || | |  ||||||||| ||||    
T  37869581 cgtcaccaaaaccctagtttcttctccttcatccattaaagagatgtgatttagggtcaattgttta-ccaaaatcatccctctaactcgtttttatctt 37869483  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  37869482 tccctt-ttattgaaataagtgattttcacatctatt 37869447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 546
Target Start/End: Complemental strand, 54420863 - 54420800
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcac 546  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| ||||||||||    
T  54420863 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcac 54420800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 605
Target Start/End: Original strand, 28990333 - 28990382
Alignment:
Q  555 ctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||| ||||    
T  28990333 ctcgtttttctctttctctt-ttattgaaataagtgattttcacatctatt 28990382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 605
Target Start/End: Original strand, 38434633 - 38434682
Alignment:
Q  555 ctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||| ||||    
T  38434633 ctcgtttttctatttctctt-ttattaaaataagtgattttcacatctatt 38434682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 600
Target Start/End: Original strand, 47465884 - 47465997
Alignment:
Q  487 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaat 585  Q
    ||||||||||||| || || |||||||| || ||||  |||||||||||| |  ||||||||||| |   | ||||||||| | ||||| ||||| ||||    
T  47465884 tttcttcttcttcttccattaaagagggatggtttagagtcaatttttgacctcaaatcacccttctacattgtttttctcctgctttt-ttatttaaat 47465982  T
Q  586 aagtgattttcacat 600  Q
    |||||||||||||||    
T  47465983 aagtgattttcacat 47465997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 545
Target Start/End: Complemental strand, 4959697 - 4959664
Alignment:
Q  512 gggtgatttaaggtcaatttttgatccaaaatca 545  Q
    |||||||||| |||||||||||||||||||||||    
T  4959697 gggtgatttagggtcaatttttgatccaaaatca 4959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 509 - 549
Target Start/End: Original strand, 18935648 - 18935688
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcaccct 549  Q
    ||||||||||||||||||||||||||| | | |||||||||    
T  18935648 gaggggtgatttaaggtcaatttttgacctagaatcaccct 18935688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 43156725 - 43156805
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaagg-tcaatttttgatccaaaatcaccc 548  Q
    ||||| ||||||||   |||||||| ||||||| |  |||||||||||||||| || ||||||||||| ||||||||||||    
T  43156725 cgtcaccaaaacttagttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttttgacccaaaatcaccc 43156805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 153 - 308
Target Start/End: Original strand, 18805805 - 18805960
Alignment:
Q  153 ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacactgtacgttttggaattaactttgttgattatg 252  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||   |||||||||||  |||||||||||||||||||||||||||       
T  18805805 ggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttgaatggcaagacggatacaccttacgttttggaattaactttgttgatttca 18805904  T
Q  253 agaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttctt 308  Q
    | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18805905 aaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttctt 18805960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 605
Target Start/End: Original strand, 6089859 - 6089977
Alignment:
Q  487 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaat 585  Q
    |||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||| | |   |||||||||| ||||  || ||||| ||||    
T  6089859 tttcttctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaattcgtttttctatttccctt-ttattgaaat 6089957  T
Q  586 aagtgattttcacatttatt 605  Q
    ||||||||||||||| ||||    
T  6089958 aagtgattttcacatctatt 6089977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 3390381 - 3390516
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||| | |  || |||||||  ||    
T  3390381 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttccttt 3390480  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  3390481 tccctt-ttattgaaataagtgattttcacatctatt 3390516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 25771394 - 25771529
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||| | |  || |||||||  ||    
T  25771394 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttccttt 25771493  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  25771494 tccctt-ttattgaaataagtgattttcacatctatt 25771529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 40125338 - 40125473
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| |||||| |||||||||||| ||||||| |  |||||||||||||||| ||| ||||||||| |||||||||||| | |  || |||||||| ||    
T  40125338 cgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttttgacccaaaatcacccctctaacttgtttttctatt 40125437  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||| || ||||| ||||| ||||||||||||| ||||    
T  40125438 tctctt-ttattgaaatacgtgattttcacatctatt 40125473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 37883639 - 37883737
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | |   |||||||||| |||| ||| |||||||||||||||||||| |||| ||||    
T  37883639 aaagaggggtgatttagggtcaatttttaatccaaaatcacccctctaattcgtttttctatttccttt-ttattaaaataagtgattttaacatctatt 37883737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 25623196 - 25623075
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||| ||||||||  || ||||||||||||||||   ||||||||||| |||||||||||| | |  ||||||||||||||||  || ||||| |    
T  25623196 tagtttctttttcttcatacatcaaagaggggtgatttattatcaatttttgacccaaaatcacccatataactcgtttttctctttccctt-ttattga 25623098  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  25623097 aataagtgattttcacatctatt 25623075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 27024304 - 27024169
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||| ||||||||||| ||||||| || ||||| |||||||||| ||||| ||||||| |||||||||||| | |  || |||||||  ||    
T  27024304 cgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttttgacccaaaatcacccctctaacttgtttttccttt 27024205  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  27024204 tccctt-ttattgaaataagtgattttcacatctatt 27024169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 7640481 - 7640391
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||| ||||||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |||||||||||||||||||    
T  7640481 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttccctt-ttattgaaataagtgattttcacat 7640391  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18805642 - 18805701
Alignment:
Q  1 agaattgattactattatcgtcatctatattatgtttcttctgcaatcaggtagcaccct 60  Q
    |||||||||||| ||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  18805642 agaattgattaccattatcgtcatctttattacgttgcatctgcaatcaggtagcaccct 18805701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 41841904 - 41842034
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaataa-agaggggtgatttaaggtcaatttttgatcc-aaaatcacccttgtgtctcgtttttctctttcttt 573  Q
    ||||||| |||||| |||| ||||||| || | |||||| ||||||| ||||||||||||| || |||||||||| | |  ||||||||||||||||  |    
T  41841904 caaaactctagttttttctccttcatccatcatagagggttgatttatggtcaatttttgacccaaaaatcacccctttaactcgtttttctctttccct 41842003  T
Q  574 tcttattaaaataagtgattttcacatttatt 605  Q
    | ||||| ||||||| ||||||||||| ||||    
T  41842004 t-ttattgaaataagcgattttcacatctatt 41842034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 478 - 547
Target Start/End: Original strand, 3464916 - 3464986
Alignment:
Q  478 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 547  Q
    ||||| || |||||||| ||||||| |  |||||||||||||||| |||||||||||||||||||||||||    
T  3464916 aaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatcacc 3464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 505 - 605
Target Start/End: Complemental strand, 16880088 - 16879995
Alignment:
Q  505 taaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttat 604  Q
    ||||||||||||||||  ||||||||||||| |||||||||||| | |  |||||||||| |||       ||||| |||||||||||||||||||||||    
T  16880088 taaagaggggtgatttttggtcaatttttgacccaaaatcacccctctcactcgtttttccctt-------ttattgaaataagtgattttcacatttat 16879996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 605
Target Start/End: Original strand, 10589001 - 10589123
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcg-tttttctctttcttttcttatta 581  Q
    |||||||||| |||||||| |  ||| |||||||||||| ||||||||||||| |||||||||||| | |  || | ||||||| ||||  || |||||     
T  10589001 tagtttcttcatcttcatccaccaaaaaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgttttttctatttccctt-ttattg 10589099  T
Q  582 aaataagtgattttcacatttatt 605  Q
    ||||||||||||||||||| ||||    
T  10589100 aaataagtgattttcacatctatt 10589123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 547
Target Start/End: Complemental strand, 25237484 - 25237413
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 547  Q
    |||||| |||||| |||| ||||||| || ||||||||||||||||  ||||| ||||||||||||||||||    
T  25237484 aaaactctagtttattctccttcatctattaaagaggggtgatttagagtcaacttttgatccaaaatcacc 25237413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 25516457 - 25516567
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||| ||||| |||||||||||| | |  ||| ||||||| ||||  || ||||| |    
T  25516457 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatatttgacccaaaatcacccctctaactcatttttctatttccctt-ttattga 25516555  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  25516556 aataagtgattt 25516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 594
Target Start/End: Complemental strand, 27191486 - 27191376
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || ||||||||| | |  ||||||||||| ||||  || ||||| |    
T  27191486 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttccctt-ttattga 27191388  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  27191387 aataagtgattt 27191376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 594
Target Start/End: Complemental strand, 27841300 - 27841190
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| || ||||||||| | |  ||||||||||| ||||  || ||||| |    
T  27841300 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttccctt-ttattga 27841202  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  27841201 aataagtgattt 27841190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 42105880 - 42105782
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||| |||| ||||||||||||| |||||||||||  | |  ||||||||||| ||||  || ||||| |||||||||| |||||||| ||||    
T  42105880 aaagaggggtgctttagggtcaatttttgacccaaaatcaccactctaactcgtttttctatttccctt-ttattgaaataagtgactttcacatctatt 42105782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 43566840 - 43566948
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||| | ||||||||||||| |||||||||||| | |  ||||||||||| |||| ||| ||||| |    
T  43566840 tagtttcttctccttcatccaccaaagaggggtgatt-agggtcaatttttgacccaaaatcaccc-tctaactcgtttttctatttccttt-ttattga 43566936  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  43566937 aataagtgattt 43566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 535
Target Start/End: Complemental strand, 31263111 - 31263053
Alignment:
Q  478 aaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttga 535  Q
    |||||||||||| |||||||||||| || |||||||||||||||| ||||||| |||||    
T  31263111 aaactttagttttttcttcttcatccatcaaagaggggtgatttagggtcaatctttga 31263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 34479911 - 34480040
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    ||||||| |||||||||||  |||||| || ||||| || |||| || ||||||||||| | |||||||||||||| |  | |  |||||||||||  ||    
T  34479911 caaaactctagtttcttctcattcatccatcaaagatggatgatatagggtcaattttttacccaaaatcacccttataacacaattttctctttccctt 34480010  T
Q  575 cttattaaaataagtgattttcacatttatt 605  Q
     ||||| ||||||||||||||||||| ||||    
T  34480011 -ttattgaaataagtgattttcacatctatt 34480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 592
Target Start/End: Original strand, 41176825 - 41176934
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcg-tttttctctttcttttcttatta 581  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| |||||| ||||| | |  |||| ||||||| ||||| || |||||     
T  41176825 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaaccacccatctaactcgttttttctatttctctt-ttattg 41176923  T
Q  582 aaataagtgat 592  Q
    |||||||||||    
T  41176924 aaataagtgat 41176934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 565
Target Start/End: Complemental strand, 44167860 - 44167778
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttct 565  Q
    ||||||||||| ||||||| |  ||||||||||||| || ||||||||||||| |||||||||||| | |  |||||||||||    
T  44167860 tagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttttgacccaaaatcacccctctaactcgtttttct 44167778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 15674103 - 15674062
Alignment:
Q  505 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 546  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  15674103 taaagaggggtgatttagggtcaatttttgacccaaaatcac 15674062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 509 - 601
Target Start/End: Complemental strand, 5071495 - 5071404
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatt 601  Q
    |||||||| |||| ||||||||||||| |  ||||||||||| |   ||||||||||  |||| || ||||| ||||||||||||||||||||    
T  5071495 gaggggtggtttatggtcaatttttgaccttaaatcacccttctaaatcgtttttcttcttctctt-ttatttaaataagtgattttcacatt 5071404  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 26491289 - 26491376
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattt 594  Q
    |||||||||| ||||||| ||||||||||| |||||||||||| | |  ||| ||||||| ||||  || ||||| |||||||||||||    
T  26491289 aaagaggggtaatttaagttcaatttttgacccaaaatcacccctttaactcatttttctatttccctt-ttattgaaataagtgattt 26491376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 597
Target Start/End: Original strand, 3602948 - 3603061
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctcttt--cttttcttatt 580  Q
    ||||||||||| ||||||| || ||||| |||||||||| |||||| ||||||  ||||||||||| | |  || ||||||||||||  ||||||   ||    
T  3602948 tagtttcttctccttcatccatcaaagatgggtgatttatggtcaacttttgactcaaaatcacccctctaacttgtttttctcttttccttttc---tt 3603044  T
Q  581 aaaataagtgattttca 597  Q
     ||||||||||||||||    
T  3603045 gaaataagtgattttca 3603061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 5930409 - 5930507
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||| ||||||||| ||| ||||||||| ||||||||| || | |  ||||||||||| ||||  || |||||  |||||||||||||||||| ||||    
T  5930409 aaagagaggtgatttagggttaatttttgacccaaaatcatccctctaactcgtttttctgtttccctt-ttatttcaataagtgattttcacatctatt 5930507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 29812743 - 29812645
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||| ||||||||| |||||||||||||  ||||||||||| | |  ||| |||||||||||   || ||||| ||||||||||||| ||||| ||||    
T  29812743 aaagagaggtgatttagggtcaatttttgacacaaaatcacccctctaactcatttttctctttacctt-ttattgaaataagtgatttccacatctatt 29812645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 545
Target Start/End: Complemental strand, 9715667 - 9715634
Alignment:
Q  512 gggtgatttaaggtcaatttttgatccaaaatca 545  Q
    |||||||||| |||||||||||||||||||||||    
T  9715667 gggtgatttagggtcaatttttgatccaaaatca 9715634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 17037778 - 17037737
Alignment:
Q  505 taaagaggggtgatttaaggtcaatttttgatccaaaatcac 546  Q
    ||||||||||||||||  ||||||||||||| ||||||||||    
T  17037778 taaagaggggtgatttttggtcaatttttgacccaaaatcac 17037737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 47749720 - 47749818
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | | |||||||||||||||||  || ||||| ||||||||||||||||||| ||||    
T  47749720 aaagaggggtgatttatggtcaatttttgacccaaaatcacccctctatctcgtttttctctttccctt-ttattgaaataagtgattttcacatctatt 47749818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 40775216 - 40775351
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  || |||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||| | |  ||||||||||  ||    
T  40775216 cgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgatccaaaatcacccctataactcgtttttccttt 40775315  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  40775316 tccctt-ttattgaaataagtgattttcacatctatt 40775351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 23732521 - 23732423
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||||||||||||||||||||||  |||||||||   | |  ||||||||||||||||| || ||||| ||||| ||||||||||||| ||||    
T  23732521 aaagaggggtgatttaaggtcaatttttgactcaaaatcacttctctaactcgtttttctctttctatt-ttattgaaatatgtgattttcacatctatt 23732423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 512 - 597
Target Start/End: Complemental strand, 25855342 - 25855258
Alignment:
Q  512 gggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttca 597  Q
    |||||||||| ||||||||||||||||||||||| || | |  ||||||||||||||||  || ||||| ||||||||||||||||    
T  25855342 gggtgatttagggtcaatttttgatccaaaatcatccctctaactcgtttttctctttccctt-ttattgaaataagtgattttca 25855258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 506 - 605
Target Start/End: Original strand, 8319300 - 8319399
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcg-tttttctctttcttttcttattaaaataagtgattttcacatttat 604  Q
    ||||||| |||||||| |||||| |||||| |||||||||||| |||  |||| ||||||| ||||  || ||||||||||||||||||||||||| |||    
T  8319300 aaagaggagtgatttatggtcaacttttgacccaaaatcacccatgtaactcgttttttctttttccatt-ttattaaaataagtgattttcacatatat 8319398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 24470358 - 24470468
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |    
T  24470358 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcgtttttctatttccctt-ttattga 24470456  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  24470457 aataagtgattt 24470468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 24475306 - 24475416
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||||| || |||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |    
T  24475306 tagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttttgacccaaaatcacccctctaactcgtttttctatttccctt-ttattga 24475404  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  24475405 aataagtgattt 24475416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 505 - 548
Target Start/End: Original strand, 28015341 - 28015384
Alignment:
Q  505 taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  28015341 taaagaggggtgatttagggtcaatttttgatccaaaatcaccc 28015384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 30992948 - 30992858
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||||||| ||||||||| |||||||||||| | |  || |||||||| ||||  || ||||| |||||||||||||||||||    
T  30992948 gaggggtgatttaaggttaatttttgacccaaaatcacccctctaacttgtttttctatttccctt-ttattgaaataagtgattttcacat 30992858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 41748657 - 41748589
Alignment:
Q  479 aactttagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcac 546  Q
    |||| |||||||||| ||||||| || |||||||  |||||||| ||||||||||||||||||||||||    
T  41748657 aactctagtttcttcatcttcattcactaaagagatgtgatttacggtcaatttttgatccaaaatcac 41748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 10250645 - 10250511
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctcttt 569  Q
    ||||| |||||| ||| ||| |||||||||||| |  || | |||||||  | |||||||||| ||||||||||||||| | |   ||||||||||  ||    
T  10250645 cgtcaccaaaaccttaatttattcttcttcatccactaaaaagggtgataaagggtcaattttcgatccaaaatcacccctctaattcgtttttctaatt 10250546  T
Q  570 cttttcttattaaaataagtgattttcacatttatt 605  Q
    | ||| ||||| ||||||||||||||||||| ||||    
T  10250545 ccttt-ttattgaaataagtgattttcacatctatt 10250511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 33530617 - 33530498
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||| | ||||||| || |||||||||||||||| ||||||  ||||| |||||| ||||| | |  | ||||||||| |||||||| ||||| |    
T  33530617 tagtttcttttacttcatctatcaaagaggggtgatttagggtcaa--tttgacccaaaaccacccctctaacccgtttttctttttctttt-ttattga 33530521  T
Q  583 aataagtgattttcacatttatt 605  Q
    ||||||||||||| |||| ||||    
T  33530520 aataagtgatttttacatctatt 33530498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 600
Target Start/End: Complemental strand, 43807271 - 43807185
Alignment:
Q  513 ggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||| ||||||||||||| |||||||||||  | |  ||||||||||| ||||| || |||||||||||||  ||||||||||    
T  43807271 ggtgatttatggtcaatttttgacccaaaatcacctctctaactcgtttttctatttctctt-ttattaaaataagcaattttcacat 43807185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 605
Target Start/End: Original strand, 47156388 - 47156478
Alignment:
Q  512 gggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||||||||||||||||||||||| || | |  ||||||| | | || |||   ||||| ||||||||||||||||||| ||||    
T  47156388 gggtgatttaaggtcaatttttgatccaaaatcatccctctaactcgtttctattttcctt---ttattgaaataagtgattttcacatctatt 47156478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Complemental strand, 24045360 - 24045318
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||| ||||||||||||||||||||||| ||||||||||||    
T  24045360 aaagagtggtgatttaaggtcaatttttgacccaaaatcaccc 24045318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 600
Target Start/End: Complemental strand, 29804804 - 29804711
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||| |||| ||||||||||||| || ||||||||| | |   ||||||||||| |||  ||| |||| |||||||||||||||||||    
T  29804804 aaagaggggtggtttagggtcaatttttgaccccaaatcacccctctaaatcgtttttctccttcccttc-tatttaaataagtgattttcacat 29804711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 547
Target Start/End: Original strand, 16263373 - 16263414
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacc 547  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  16263373 aaagaggggtgatttaggatcaatttttgatccaaaatcacc 16263414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 605
Target Start/End: Complemental strand, 13008793 - 13008703
Alignment:
Q  513 ggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||| ||||||||||| || |||||| |||||  |  || |||||||||||||| || ||||| ||||||||||||||||||| ||||    
T  13008793 ggtgatttagggtcaatttttaattcaaaataaccctc-taactagtttttctctttctctt-ttattgaaataagtgattttcacatctatt 13008703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 594
Target Start/End: Complemental strand, 8611773 - 8611663
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||  ||||||| |||| ||||||| | |  ||||||||||| ||||  || ||||| |    
T  8611773 tagtttcttctccttcatccacgaaagaggggtgatttagggtctctttttgacccaatatcacccctctaactcgtttttctatttccctt-ttattga 8611675  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  8611674 aataagtgattt 8611663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 605
Target Start/End: Complemental strand, 23177740 - 23177612
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaat-ttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    |||||| ||||||||||| ||||||| || ||||| | |||||||||||||||| |||| | |||||||||| | | |  || |||||||||||  ||      
T  23177740 aaaactctagtttcttctccttcatccattaaagatgagtgatttaaggtcaatttttttacccaaaatcactcctctaactagtttttctctt--ttcc 23177643  T
Q  575 cttattaaaataagtgattttcacatttatt 605  Q
     ||||| ||||||||||||||||||| ||||    
T  23177642 tttattgaaataagtgattttcacatctatt 23177612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 49166890 - 49167000
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| | |||||||||| | |  || |||||||| ||||  || ||||| |    
T  49166890 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacctaaaatcacccctctaacttgtttttctatttccctt-ttattga 49166988  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  49166989 aataagtgattt 49167000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 605
Target Start/End: Complemental strand, 35135310 - 35135213
Alignment:
Q  507 aagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||| ||||||||  |||||||||||| | |||||| | ||| |  ||||||||| |||||| ||| ||||| ||||| ||||||||||||| ||||    
T  35135310 aagaggagtgatttagagtcaatttttgacctaaaatcgctcttctagctcgtttttatctttccttt-ttattgaaatacgtgattttcacatctatt 35135213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 548
Target Start/End: Complemental strand, 38649506 - 38649444
Alignment:
Q  487 tttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||||  ||||||||| |||| ||||||||||||  |||||||||||| ||||||||||||    
T  38649506 tttcttcaccttcatcaactaaaaaggggtgatttagagtcaatttttgacccaaaatcaccc 38649444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 35141881 - 35141781
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctcttt---cttttcttattaaaataagtgattttcacattt 602  Q
    ||||| |||||||||| ||||||||||||| | |||||||||||| |  ||| ||||| |||||   | ||  ||||| ||||||||||||||||||| |    
T  35141881 aaagaagggtgatttagggtcaatttttgaccaaaaatcacccttctaactcatttttgtcttttaacctt--ttattgaaataagtgattttcacatct 35141784  T
Q  603 att 605  Q
    |||    
T  35141783 att 35141781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 545
Target Start/End: Original strand, 43483558 - 43483619
Alignment:
Q  484 tagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatca 545  Q
    |||||||| | |||||||| |  |||||| |||||||| ||||||||||||||| |||||||    
T  43483558 tagtttctgcatcttcatccactaagaggagtgatttagggtcaatttttgatctaaaatca 43483619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 605
Target Start/End: Original strand, 44681454 - 44681545
Alignment:
Q  512 gggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||| | ||||||||||| | |||||||||| | |  ||||||||||| ||||  || ||||| ||||||||||||||||||| ||||    
T  44681454 gggtgatttaggttcaatttttgacctaaaatcaccc-tctaactcgtttttctttttccctt-ttattgaaataagtgattttcacatctatt 44681545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 32457601 - 32457730
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    |||||| ||||||| |||| ||||||| | |||||||||||||||||  |||||||||||| |||||||||||| | |  |||||||||||||||| |||    
T  32457601 caaaaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttttgacccaaaatcacccatctaactcgtttttctctttcattt 32457700  T
Q  575 cttattaaaataagtgattttcacatttatt 605  Q
     ||||| |||||||||| |||||||| ||||    
T  32457701 -ttattgaaataagtgactttcacatgtatt 32457730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 509 - 602
Target Start/End: Original strand, 19759777 - 19759869
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacattt 602  Q
    ||||||||||||| ||||||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |||||||||||||||||||||    
T  19759777 gaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttccctt-ttattgaaataagtgattttcacattt 19759869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 20844956 - 20845092
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagagggg-tgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctct 567  Q
    ||||| |||||| |||||||||||| ||| ||| |  ||||||||| | ||| ||||||||||||||| |||||||||||| | |  |||||||||||||    
T  20844956 cgtcaccaaaaccttagtttcttctcctttatctaccaaagagggggtaattcaaggtcaatttttgacccaaaatcacccctctaactcgtttttctct 20845055  T
Q  568 ttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||  || ||||| ||||||||||||||||||| ||||    
T  20845056 ttccctt-ttattgaaataagtgattttcacatctatt 20845092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 16913277 - 16913412
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| || ||||||||| | |  |||||||||| |||    
T  16913277 cgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccgaaatcacccctctaactcgtttttcactt 16913376  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || | ||| ||||||||||||||||||| ||||    
T  16913377 tcactt-tcattgaaataagtgattttcacatctatt 16913412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 508 - 605
Target Start/End: Complemental strand, 548991 - 548895
Alignment:
Q  508 agaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||| ||||| |||||||||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| ||||||| ||||||||||| ||||    
T  548991 agaggagtgatataaggtcaatttttgacccaaaatcacccctctaactcgtttttctttttccctt-ttattgaaataagcgattttcacatctatt 548895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 506 - 599
Target Start/End: Complemental strand, 4663948 - 4663856
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcaca 599  Q
    ||||||||||||||   ||||||||||||| |||||||||||| | |  | ||||||| | ||||| || ||||||||||||||||||||||||    
T  4663948 aaagaggggtgattgtgggtcaatttttgacccaaaatcacccctctaacacgtttttatgtttctctt-ttattaaaataagtgattttcaca 4663856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 12576606 - 12576508
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||||| ||||||||||||| || ||||||||| | |  || |||||||| ||||  || | ||| ||||||||||||||||||| ||||    
T  12576606 aaagaggggtgatttagggtcaatttttgaccctaaatcacccctctaacttgtttttctatttccctt-taattgaaataagtgattttcacatctatt 12576508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 605
Target Start/End: Complemental strand, 13234233 - 13234138
Alignment:
Q  508 agaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||| ||||||||||||| | ||||||||| || |   |||||||||| ||||  || ||||| ||||||||||||||||||| ||||    
T  13234233 agaggggtgatttagggtcaatttttgacctaaaatcacc-ttctaattcgtttttctttttccctt-ttattgaaataagtgattttcacatctatt 13234138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 598
Target Start/End: Complemental strand, 15128313 - 15128186
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| |||||  |||||||||||| ||||||| || |||||  | ||||||| ||||||||||||  |||||||||||| | |  ||||||||||||||    
T  15128313 cgtcaccaaaatcttagtttcttctacttcatccatcaaagatagatgattta-ggtcaatttttgtcccaaaatcacccctctaactcgtttttctctt 15128215  T
Q  569 tcttttcttattaaaataagtgattttcac 598  Q
    ||  ||  |||| |||||||||||||||||    
T  15128214 tccctt-gtattgaaataagtgattttcac 15128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 597
Target Start/End: Original strand, 7049233 - 7049322
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttca 597  Q
    |||||||||||||||| |||||| ||||||  ||||||||||| |  | ||| ||||||||||||  || ||||| ||||||||||||||||    
T  7049233 aaagaggggtgatttagggtcaacttttgactcaaaatcacccctcag-ctcatttttctctttccctt-ttattgaaataagtgattttca 7049322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 546
Target Start/End: Original strand, 33194568 - 33194631
Alignment:
Q  484 tagtttcttcttcttcatcaata-aagaggggtgatttaaggtcaatttttgatccaaaatcac 546  Q
    ||||||||||||||||||| ||  || |  ||||||||| ||||||||||||||||||||||||    
T  33194568 tagtttcttcttcttcatccattcaatattggtgatttagggtcaatttttgatccaaaatcac 33194631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 600
Target Start/End: Original strand, 32804281 - 32804374
Alignment:
Q  507 aagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctc-gtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    |||| |||||||||| ||||||||||||| |||||||||||| | |  |||  |||||||||| |  || ||||| |||||||||||||||||||    
T  32804281 aagatgggtgatttagggtcaatttttgacccaaaatcacccatctaactcattttttctcttaccctt-ttattgaaataagtgattttcacat 32804374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 545
Target Start/End: Original strand, 34020582 - 34020643
Alignment:
Q  485 agtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 545  Q
    |||||||||||||||||| |  ||||||||||| |||| ||||||||||||| |||| ||||    
T  34020582 agtttcttcttcttcatctaccaaagaggggtggtttagggtcaatttttgacccaacatca 34020643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 20201209 - 20201088
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| |||||||||||| | |  ||||||||||||||||  || ||||| |    
T  20201209 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcactt-ttattga 20201111  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  20201110 aataagtgattttcacatctatt 20201088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 20203391 - 20203270
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| |||||||||||| | |  ||||||||||||||||  || ||||| |    
T  20203391 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcactt-ttattga 20203293  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  20203292 aataagtgattttcacatctatt 20203270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 1165561 - 1165426
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||| | |  || |||||||| ||    
T  1165561 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcacccctctaacttgtttttctttt 1165462  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  1165461 tccctt-ttattgaaataagtgattttcacatctatt 1165426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 487 - 605
Target Start/End: Original strand, 50460160 - 50460276
Alignment:
Q  487 tttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaat 585  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||   ||||||||||   |  ||||||||||||||||| || ||||| ||||    
T  50460160 tttcttcttcttcatccatcaaagagggatgatttaaggtcaatttttgacataaaatcaccc--atacctcgtttttctctttctctt-ttattgaaat 50460256  T
Q  586 aagtgattttcacatttatt 605  Q
    ||||||||||||||| ||||    
T  50460257 aagtgattttcacatctatt 50460276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 21803479 - 21803614
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| |  ||||||| |||||| |  |||||||||||| |||||||||||| | |  ||||||||||||||    
T  21803479 cgtcaccaaaaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttttgacccaaaatcacccctctaactcgtttttctctt 21803578  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||| || ||||| ||| ||||||||||||||| ||||    
T  21803579 tctctt-ttattgaaacaagtgattttcacatctatt 21803614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 595
Target Start/End: Complemental strand, 1220374 - 1220255
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    ||||||| || |||||||| ||||| | || |||||||||||||||| | |||||||||||| ||||||||||| | |  ||||||||||||||||  ||    
T  1220374 caaaactctaatttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcacccctctaactcgtttttctctttccctt 1220275  T
Q  575 cttattaaaataagtgatttt 595  Q
     || || ||||||||||||||    
T  1220274 -ttgttgaaataagtgatttt 1220255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 43029632 - 43029767
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||| ||||||| |||||||||||| | |  || |||||||  ||    
T  43029632 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttttgacccaaaatcacccctctaacttgtttttccttt 43029731  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  43029732 tccctt-ttattgaaataagtgattttcacatctatt 43029767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 50519753 - 50519863
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  ||||| |||||||||| ||||||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |    
T  50519753 tagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttccctt-ttattga 50519851  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  50519852 aataagtgattt 50519863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 43839667 - 43839548
Alignment:
Q  484 tagtttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| |||||| || |||||| |||||||||| ||||||||||||| ||||| |||||| | |  |||| |||||||||||  || ||||| |    
T  43839667 tagtttcttctccttcattcactaaagatgggtgatttagggtcaatttttga-ccaaagtcaccc-tctaactcgcttttctctttccctt-ttattga 43839571  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  43839570 aataagtgattttcacatctatt 43839548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 605
Target Start/End: Complemental strand, 25374227 - 25374100
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctcttt--ctttt 574  Q
    |||||| ||||||||| | ||||||  | ||||| |||||||||| ||| ||||||||| | |||||||||| | |  |||||||||||||||  |||||    
T  25374227 aaaactctagtttcttttccttcattcacaaagaagggtgatttagggttaatttttgacctaaaatcacccctctaactcgtttttctcttttcctttt 25374128  T
Q  575 cttattaaaataagtgattttcacatttatt 605  Q
    |   || ||||||||||||||||||| ||||    
T  25374127 c---ttgaaataagtgattttcacatctatt 25374100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 490 - 600
Target Start/End: Complemental strand, 1806605 - 1806495
Alignment:
Q  490 cttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataag 588  Q
    ||||||||||||| |  ||||||||||| |||| |||||||||||||||| ||||||||| | |   ||||||||||| |||  ||| |||| |||||||    
T  1806605 cttcttcttcatccaccaaagaggggtggtttagggtcaatttttgatcccaaatcacccctctaaatcgtttttctccttccattc-tatttaaataag 1806507  T
Q  589 tgattttcacat 600  Q
    | ||||||||||    
T  1806506 ttattttcacat 1806495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 22844000 - 22844079
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||| ||||||  |||||| |||| ||||||  || |||||||| ||||||||||||||||||||| ||||||||||||    
T  22844000 cgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttttgacccaaaatcaccc 22844079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 570
Target Start/End: Complemental strand, 41882559 - 41882472
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttc 570  Q
    ||||||||||| ||||||| || ||||||| |||||||| ||||||||||||| ||||||| |||| | |  ||||||||||| ||||    
T  41882559 tagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttttgacccaaaattacccctctaactcgtttttctatttc 41882472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 42106060 - 42106139
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||| ||||||  |||||||||| |||||||| |  |||||||||||||||| ||||||||||||| | ||||||||||    
T  42106060 cgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaatcaccc 42106139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 34766936 - 34767063
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaata-aagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    ||||||| ||||||| ||||||||||  ||  |||| |||||||||| ||| ||| || || |||||||||||||  |  ||||||||||||||||  ||    
T  34766936 caaaactctagtttcatcttcttcattcatcgaagatgggtgatttagggttaatatt-gacccaaaatcaccctc-taactcgtttttctctttccctt 34767033  T
Q  575 cttattaaaataagtgattttcacatttatt 605  Q
     ||||| ||||||||||||||||||||||||    
T  34767034 -ttattgaaataagtgattttcacatttatt 34767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 35501909 - 35501789
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||| ||||||||| |||||||||||| | |  ||||||||||||||||  || ||| | |    
T  35501909 tagtttcttctccttcatccaccaaagaggg-tgatttagggttaatttttgacccaaaatcacccctctaactcgtttttctctttccctt-ttactga 35501812  T
Q  583 aataagtgattttcacatttatt 605  Q
    ||||| |||||||||||| ||||    
T  35501811 aataaatgattttcacatctatt 35501789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 506 - 597
Target Start/End: Original strand, 20251637 - 20251728
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttg-atccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttca 597  Q
    |||||||||||||||| |||| ||||||  | |||||||||||||| |  ||||||||||||||||  || | ||| ||||||||||||||||    
T  20251637 aaagaggggtgatttagggtcgatttttttacccaaaatcacccttctaactcgtttttctctttccctt-tgattgaaataagtgattttca 20251728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 548
Target Start/End: Complemental strand, 913483 - 913404
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||| |||||| ||||||||||| |||||||| |  |||||||||| ||| |  |||||||||||| ||||||||||||    
T  913483 cgtcaccaaaaccttagtttcttcatcttcatccaccaaagaggggtaattcatagtcaatttttgacccaaaatcaccc 913404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 565
Target Start/End: Complemental strand, 22286900 - 22286818
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttct 565  Q
    ||||||||||| ||||||| |  |||||||||||||||| ||||||||||||| | ||||| |||| | |  |||||||||||    
T  22286900 tagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacctaaaattacccctctaactcgtttttct 22286818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 477 - 605
Target Start/End: Original strand, 9269977 - 9270105
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttc 575  Q
    |||||| ||||||||||| ||||||| |  |||||||||||||||| | ||||||||||| |||||||||||| | |  ||||||||||||||||  ||     
T  9269977 aaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttttgacccaaaatcacccctctaactcgtttttctctttccctt- 9270075  T
Q  576 ttattaaaataagtgattttcacatttatt 605  Q
    ||||| ||||||||||||||||||| ||||    
T  9270076 ttattgaaataagtgattttcacatctatt 9270105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 605
Target Start/End: Original strand, 9992631 - 9992749
Alignment:
Q  487 tttcttcttcttcat-caataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaat 585  Q
    |||||||| |||||| || || || ||||||||||| ||||||||||||| |||||||||||| | |  ||||||||||||||||  || ||||| ||||    
T  9992631 tttcttctccttcattcattagaggggggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttccctt-ttattgaaat 9992729  T
Q  586 aagtgattttcacatttatt 605  Q
    ||||||||||||||| ||||    
T  9992730 aagtgattttcacatctatt 9992749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 605
Target Start/End: Original strand, 13864322 - 13864443
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||  || ||||||||||||||||||||||| |||||| |||||||||||  |||  ||||||||| | ||||  || ||||| |    
T  13864322 tagtttcttctccttcatttatcaaagaggggtgatttaaggtcaacttttgagccaaaatcacctatgtaactcgtttttttatttccctt-ttattga 13864420  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  13864421 aataagtgattttcacatctatt 13864443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 605
Target Start/End: Original strand, 23766698 - 23766824
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttc 575  Q
    |||||| ||||||||||| ||||||| |  ||||||  |||||||||||||||||||||| ||||||||||||   |  ||||||||||| ||| |  |     
T  23766698 aaaactctagtttcttctacttcatccaccaaagagatgtgatttaaggtcaatttttgacccaaaatcaccc--ataactcgtttttctattt-tcatt 23766794  T
Q  576 ttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||||||||||||||||||||||    
T  23766795 ttattaaaataagtgattttcacatttatt 23766824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 605
Target Start/End: Original strand, 31874047 - 31874168
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| || |||||| ||||||||| ||||||||||||| |||||||||||| | |  ||||||||||  ||||  || ||||| |    
T  31874047 tagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttccttttccctt-ttattga 31874145  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  31874146 aataagtgattttcacatctatt 31874168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 36545932 - 36545811
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||| ||||||||||||||||| ||| |||| ||||||| | |  ||||||||||||||||  || ||||| |    
T  36545932 tagtttcttctccttcatccaccaaagagggatgatttaaggtcaatttgtgacccaatatcacccctctaactcgtttttctctttccctt-ttattga 36545834  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||||||||||| ||||    
T  36545833 aataagtgattttcacatctatt 36545811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 15665488 - 15665623
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatc-aataaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||| |||||||||   ||||||| || |||||||||||||||| |||||| ||||||  ||||||||||| | |  || |||||||||||    
T  15665488 cgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaacttttgacacaaaatcacccctctaacttgtttttctctt 15665587  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| |||||||| |||||||||| ||||    
T  15665588 tcactt-ttattgaaataagtaattttcacatctatt 15665623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 600
Target Start/End: Complemental strand, 14531036 - 14530943
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||| |||| |||||||||||||  | ||||||||||| |   ||||||||||| |||| ||| |||| |||||||||||||||||||    
T  14531036 aaagaggggtggtttagggtcaatttttgactccaaatcacccttctaaatcgtttttctccttctcttc-tatttaaataagtgattttcacat 14530943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 44295284 - 44295400
Alignment:
Q  489 tcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataa 587  Q
    |||||| ||||||| || |||||||||||||||| ||||||||||||| ||||||||| |  | |  || |||||||  |||| ||| ||||| ||||||    
T  44295284 tcttctccttcatccatcaaagaggggtgatttagggtcaatttttgacccaaaatcatctctctaacttgtttttccttttccttt-ttattgaaataa 44295382  T
Q  588 gtgattttcacatttatt 605  Q
    ||||||||||||| ||||    
T  44295383 gtgattttcacatctatt 44295400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 16937504 - 16937428
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 545  Q
    ||||| ||||||  ||||||||||  ||||||| |  |||||||||||||||| |||||||||||||||||||||||    
T  16937504 cgtcatcaaaaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttttgatccaaaatca 16937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 10042747 - 10042789
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  10042747 aaagaggggtgatttatggtcaatttttgacccaaaatcaccc 10042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 600
Target Start/End: Complemental strand, 27534527 - 27534434
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    |||||||||||||||| |||||||||||||||| |||||  || | |   | ||||||||| ||| ||| ||||| |||||||||||||||||||    
T  27534527 aaagaggggtgatttagggtcaatttttgatcccaaatcgtccctctacattgtttttctccttccttt-ttatttaaataagtgattttcacat 27534434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 8054933 - 8054843
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||| ||||||||||||| ||||||| | || | |  ||||||||||| ||||  ||  |||| |||||||||||||||||||    
T  8054933 gaggggtgatttagggtcaatttttgacccaaaattatccctctaactcgtttttctatttccctt-atattgaaataagtgattttcacat 8054843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 37658952 - 37658994
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||||||||||||| |||||||||||||  |||||||||||    
T  37658952 aaagaggggtgatttagggtcaatttttgacacaaaatcaccc 37658994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 605
Target Start/End: Complemental strand, 7269585 - 7269494
Alignment:
Q  513 ggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||  |||||||||||| || ||||||||||| |  |||| |||| |||||| ||| | |||  |||||||||||||||||| ||||    
T  7269585 ggtgatttagagtcaatttttgaccctaaatcacccttctaactcgcttttttctttccttt-taattgtaataagtgattttcacatctatt 7269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 556 - 600
Target Start/End: Complemental strand, 32104916 - 32104873
Alignment:
Q  556 tcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    |||||||||| |||||||| ||||| |||||||||||||||||||    
T  32104916 tcgtttttctatttctttt-ttattgaaataagtgattttcacat 32104873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 39067860 - 39067816
Alignment:
Q  488 ttcttcttcttcatcaataaagaggggtgatttaaggtcaatttt 532  Q
    |||||||||||| ||  | ||||||||||||||||||||||||||    
T  39067860 ttcttcttcttcttcttttaagaggggtgatttaaggtcaatttt 39067816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 31645778 - 31645913
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||| | |  || |||||||  ||    
T  31645778 cgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttttgatccaaaatcacccctctaacttgtttttccttt 31645877  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  31645878 tccctt-ttattgaaataagtgattttcacatctatt 31645913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 477 - 605
Target Start/End: Original strand, 4070512 - 4070638
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttc 575  Q
    |||||| ||||||||||| ||||||| |  ||| |||||||||||| ||||| ||||||| |||||||||||| | || ||||||||||| |||| |||     
T  4070512 aaaactctagtttcttct-cttcatccaccaaaaaggggtgatttagggtca-tttttgacccaaaatcacccctctgactcgtttttctatttccttt- 4070608  T
Q  576 ttattaaaataagtgattttcacatttatt 605  Q
    ||||| ||||||||||||||||||||||||    
T  4070609 ttattgaaataagtgattttcacatttatt 4070638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 6887343 - 6887208
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||| ||||||||||| ||||||| || |||||||||||||||| ||||||||||| | |||||||||||| | |  || |||||||  ||    
T  6887343 cgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttttaacccaaaatcacccctctaacttgtttttccttt 6887244  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  6887243 tccctt-ttattgaaataagtgattttcacatctatt 6887208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 569
Target Start/End: Complemental strand, 34894067 - 34893981
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctcttt 569  Q
    ||||||||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||| | |  |||||||||||||||    
T  34894067 tagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttttgacccaaaatcacccctctaactcgtttttctcttt 34893981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 15710495 - 15710626
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttg--atccaaaatcacccttgtgtctcgtttttctctttctt 572  Q
    ||||||| ||||||||| | ||||||| || ||||| |||||||||| |||||||||||   |||||||||||||| | |  ||||||||||||||||      
T  15710495 caaaactctagtttcttttccttcatccatcaaagatgggtgatttatggtcaattttttttatccaaaatcacccctctaactcgtttttctctttccc 15710594  T
Q  573 ttcttattaaaataagtgattttcacatttatt 605  Q
    || ||||| ||||||||||||||||||| ||||    
T  15710595 tt-ttattgaaataagtgattttcacatctatt 15710626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 594
Target Start/End: Original strand, 28618567 - 28618677
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||||   |||||||||||||||||||||||||||| | |||||||||||| | |  ||||||||||| ||||  || ||||| |    
T  28618567 tagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttttaacccaaaatcacccctctaactcgtttttctatttccctt-ttattga 28618665  T
Q  583 aataagtgattt 594  Q
    ||||||||||||    
T  28618666 aataagtgattt 28618677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 595
Target Start/End: Original strand, 41988139 - 41988258
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    ||||||| ||||||||||| ||||| | || |||||||||||||||| | |||||||||||| ||||||| ||| | |  ||||||||||||||||  ||    
T  41988139 caaaactctagtttcttctccttcacctatcaaagaggggtgatttaggatcaatttttgattcaaaatcgcccctctaactcgtttttctctttccctt 41988238  T
Q  575 cttattaaaataagtgatttt 595  Q
     || || ||||||||||||||    
T  41988239 -ttgttgaaataagtgatttt 41988258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 19646169 - 19646071
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||| |||||||||||| ||||| |||||||||||| | |  ||| ||||||||||||  || ||| | ||||||||||||||||||| ||||    
T  19646169 aaagaggggtggtttaaggtcaatgtttgacccaaaatcacccctctaactcatttttctctttccctt-ttaatgaaataagtgattttcacatctatt 19646071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 548
Target Start/End: Complemental strand, 33486735 - 33486656
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||| |||||| ||| |||||||  ||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||    
T  33486735 cgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttttgacccaaaatcaccc 33486656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 9035099 - 9034978
Alignment:
Q  484 tagtttcttcttcttcatcaataaa-gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| || || ||||||||||||| | |||||||||||  |||||||| || | |  ||||||||||||||||  || |||||||    
T  9035099 tagtttcttctccttcatctatcaatgaggggtgatttatgatcaatttttgactcaaaatcatccctctaactcgtttttctctttccatt-ttattaa 9035001  T
Q  583 aataagtgattttcacatttatt 605  Q
    |||||||||  ||||||| ||||    
T  9035000 aataagtgacattcacatctatt 9034978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 29310476 - 29310435
Alignment:
Q  507 aagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29310476 aagaggggtgatttagggtcaatttttgatccaaaatcaccc 29310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 597
Target Start/End: Original strand, 2415393 - 2415476
Alignment:
Q  513 ggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttca 597  Q
    ||||||||| ||||||||||||| |||||||||||||| |  || |||||||| ||||  || ||||| ||||||||||||||||    
T  2415393 ggtgatttagggtcaatttttgacccaaaatcacccttctaacttgtttttctttttccctt-ttattgaaataagtgattttca 2415476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 600
Target Start/End: Complemental strand, 4727053 - 4726963
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||| ||||| ||||||||||||| ||||||||| || | |  ||||||||||| ||||  || ||||| |||||||||||||||||||    
T  4727053 gaggggtaatttagggtcaatttttgacccaaaatcatccatataactcgtttttctatttccctt-ttattgaaataagtgattttcacat 4726963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 548
Target Start/End: Original strand, 41554472 - 41554514
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  41554472 aaagaggggtgatttaggatcaatttttgatccaaaatcaccc 41554514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 30363051 - 30363135
Alignment:
Q  166 aaggatattttgcatggtcccttttggacaactttgaatggagtgacggatacactgtacgttttggaattaactttgttgatta 250  Q
    ||||||||||||| ||||| || |||||||| ||||||||| |||| || ||||| ||  | |||||||| |||||||| |||||    
T  30363051 aaggatattttgcgtggtcgctattggacaattttgaatggggtgaagggtacacagtgaggtttggaatgaactttgtagatta 30363135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 41357993 - 41358123
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca-cccttgtgtctcgtttttctctttcttt 573  Q
    ||||||| ||||||||| | ||||||  || |||||  ||||||||| ||||||||||||| ||||||||| ||| | |  ||||||||||||||| |      
T  41357993 caaaactctagtttcttttccttcatagatcaaagataggtgatttagggtcaatttttgacccaaaatcaccccctctaactcgtttttctcttt-tcc 41358091  T
Q  574 tcttattaaaataagtgattttcacatttatt 605  Q
    | ||||| |||||||| |||||||||| ||||    
T  41358092 ttttattgaaataagttattttcacatctatt 41358123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 555 - 605
Target Start/End: Complemental strand, 32390726 - 32390677
Alignment:
Q  555 ctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||||| ||||    
T  32390726 ctcgtttttctctttccttt-ttattgaaataagtgattttcacatctatt 32390677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 548
Target Start/End: Complemental strand, 8812310 - 8812238
Alignment:
Q  477 aaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||| |||||||||| |||||||| |  ||| ||||||||| || ||||||||||| | ||||||||||||    
T  8812310 aaaactctagtttcttcatcttcatccaccaaaaaggggtgatatagggtcaatttttaacccaaaatcaccc 8812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 556 - 600
Target Start/End: Original strand, 8957247 - 8957290
Alignment:
Q  556 tcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||| ||||||| ||||| |||||||||||||||||||    
T  8957247 tcgtttttctccttctttt-ttatttaaataagtgattttcacat 8957290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 546
Target Start/End: Original strand, 37424979 - 37425019
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcac 546  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  37424979 aaagaggggtgatttatggtcaatttctgacccaaaatcac 37425019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 476 - 605
Target Start/End: Original strand, 38646539 - 38646668
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttctttt 574  Q
    ||||||| || ||| |||| ||||||| || ||||||| |||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||| || |    
T  38646539 caaaactctaattttttctccttcatctatcaaagaggagtgatttatggtcaatttttgacccaaaatcacccatgtaactcgtttttctcttt-ttct 38646637  T
Q  575 cttattaaaataagtgattttcacatttatt 605  Q
     ||||| |||||||||||||| |||| ||||    
T  38646638 tttattgaaataagtgattttaacatctatt 38646668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 22345077 - 22344942
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||  ||||||||||| ||||||| || |||||||||||||||| | ||||||||||| |||||||||||| | |  || |||||||  ||    
T  22345077 cgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttttgacccaaaatcacccctctaacttgtttttccttt 22344978  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  22344977 tccctt-ttattgaaataagtgattttcacatctatt 22344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 470 - 545
Target Start/End: Complemental strand, 27469897 - 27469821
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 545  Q
    ||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||||    
T  27469897 cgtcaccaaaattctagtttcttcttcttcatccattaaagaggggtgatttaaggtcaattttcgaaccaaaatca 27469821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 507 - 605
Target Start/End: Original strand, 5832220 - 5832317
Alignment:
Q  507 aagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||||||||| ||||||||||||| || ||||||||| | |  ||||||||||| ||||  || ||||| ||||||||||||||||||| ||||    
T  5832220 aagaggggtgatttagggtcaatttttgaccctaaatcacccctctaactcgtttttctatttccctt-ttattgaaataagtgattttcacatctatt 5832317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 484 - 600
Target Start/End: Complemental strand, 6213037 - 6212921
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| |||| || || |||||||||||||||| ||||||||||||| |||||||||| | | |  ||||||||||  ||||  || ||||| |    
T  6213037 tagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttttgacccaaaatcacacctctaactcgtttttccttttccctt-ttattga 6212939  T
Q  583 aataagtgattttcacat 600  Q
    ||||||||||||||||||    
T  6212938 aataagtgattttcacat 6212921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 600
Target Start/End: Complemental strand, 13691916 - 13691793
Alignment:
Q  478 aaactttagtttcttcttcttcatcaa-taaagagggg-tgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttc 575  Q
    |||| ||| |||||||||||||||| | |||||||||| || |||| ||||||||||||| |||||||||||| | |   ||||||||||| |||  |||    
T  13691916 aaaccttaatttcttcttcttcatccactaaagagggggtggtttagggtcaatttttgacccaaaatcacccctctaaatcgtttttctccttcacttc 13691817  T
Q  576 ttattaaaataagtgattttcacat 600  Q
     |||| |||||||||||||||||||    
T  13691816 -tatttaaataagtgattttcacat 13691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 470 - 605
Target Start/End: Complemental strand, 14717407 - 14717273
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    ||||| ||||||| ||||||||||| ||||||| |  |||||||||||||||| |||||||||||||   ||| |||||| | |  ||||||||||| ||    
T  14717407 cgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttttgacttaaattcaccc-tctaactcgtttttctttt 14717309  T
Q  569 tcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||  || ||||| ||||||||||||||||||| ||||    
T  14717308 tccctt-ttattgaaataagtgattttcacatctatt 14717273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 512 - 600
Target Start/End: Complemental strand, 44562871 - 44562784
Alignment:
Q  512 gggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    |||||||||| ||||||||||||| |||||||||||| | |  ||||||||||| ||||  || ||||| |||||||||||||||||||    
T  44562871 gggtgatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctatttccctt-ttattgaaataagtgattttcacat 44562784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 563
Target Start/End: Original strand, 52839378 - 52839466
Alignment:
Q  476 caaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgttttt 563  Q
    ||||||| |||||| ||||  |||||| || |||||||||||||||| ||||||||||||| |||||||||||||| |  |||||||||    
T  52839378 caaaactctagtttgttctctttcatccattaaagaggggtgatttagggtcaatttttgacccaaaatcacccttctaactcgttttt 52839466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 510 - 605
Target Start/End: Complemental strand, 630909 - 630815
Alignment:
Q  510 aggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||| ||||||||||||| || ||||||||| | |  ||||||||||| ||||  || ||||| ||||||||||||||||||| ||||    
T  630909 aggggtgatttagggtcaatttttgaccctaaatcacccatctaactcgtttttctatttccctt-ttattgaaataagtgattttcacatctatt 630815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 527 - 605
Target Start/End: Original strand, 8893300 - 8893377
Alignment:
Q  527 aatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||||||| |||||||||||||| |  ||||||||||||||||  || ||||| ||||||||||||||||||| ||||    
T  8893300 aatttttgacccaaaatcacccttctaactcgtttttctctttccctt-ttattgaaataagtgattttcacatctatt 8893377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 600
Target Start/End: Original strand, 21326462 - 21326552
Alignment:
Q  509 gaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacat 600  Q
    ||||||||||||| | ||||||||||| | |||||||||| | |  ||||||||||| ||||  || ||||| |||||||||||||||||||    
T  21326462 gaggggtgatttaggatcaatttttgaacaaaaatcacccctctaactcgtttttctatttccctt-ttattgaaataagtgattttcacat 21326552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 35078018 - 35077920
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||| | ||||||| | |||| |||||| |||||||||||  | |  |||||||||||||||| ||| ||||| ||||||||||||||||||| ||||    
T  35078018 aaagagagatgatttatgatcaaattttgacccaaaatcacctctctaactcgtttttctctttcattt-ttattgaaataagtgattttcacatctatt 35077920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 547
Target Start/End: Complemental strand, 44514119 - 44514077
Alignment:
Q  505 taaagaggggtgatttaaggtcaatttttgatccaaaatcacc 547  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  44514119 taaagaggggtgatttagggtcaatttttgacccaaaatcacc 44514077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 568
Target Start/End: Original strand, 52839507 - 52839569
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctt 568  Q
    |||||||||||||||| | ||||||||||| |||||||||||||| |  ||||||||| ||||    
T  52839507 aaagaggggtgatttatgatcaatttttgacccaaaatcacccttctaactcgtttttttctt 52839569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 30853934 - 30853869
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    ||||||||||| ||||||| |  ||||||| |||||| ||||||||||||||| ||||||||||||    
T  30853934 tagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttttgacccaaaatcaccc 30853869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 597
Target Start/End: Original strand, 17579754 - 17579844
Alignment:
Q  506 aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttca 597  Q
    |||||||||||| ||| ||||||||||||| ||||||||| || | |  ||| ||||||||||||  || | ||| ||||||||||||||||    
T  17579754 aaagaggggtgacttagggtcaatttttgaaccaaaatcatccctctaactcatttttctctttccctt-taattgaaataagtgattttca 17579844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 605
Target Start/End: Complemental strand, 15276553 - 15276480
Alignment:
Q  531 tttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    ||||| |||||||||||| | |  ||||||||||||||||  || ||||| ||||||||||||||||||| ||||    
T  15276553 tttgacccaaaatcacccatctcactcgtttttctctttccctt-ttattgaaataagtgattttcacatctatt 15276480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 33703660 - 33703595
Alignment:
Q  484 tagtttcttcttcttcatcaa-taaagaggggtgatttaaggtcaatttttgatccaaaatcaccc 548  Q
    |||||| |||| ||||||| | ||||||||| ||||||| ||||||||||| | ||||||||||||    
T  33703660 tagttttttctccttcatccactaaagagggatgatttatggtcaattttttacccaaaatcaccc 33703595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 605
Target Start/End: Original strand, 40992349 - 40992420
Alignment:
Q  535 atccaaaatcacccttgtgtctcgtttttctctttcttttcttatt--aaaataagtgattttcacatttatt 605  Q
    |||||||||||||| | |  ||||||||||||||||  || |||||  |||||||||||||||||||||||||    
T  40992349 atccaaaatcacccctctaactcgtttttctctttccctt-ttattgaaaaataagtgattttcacatttatt 40992420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 605
Target Start/End: Original strand, 23257101 - 23257172
Alignment:
Q  533 tgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||| ||||||||| | |  |||||||||| |||||  || ||||| ||||||||||||||||||||||||    
T  23257101 tgatcccaaatcacccctctcactcgtttttccctttccctt-ttattgaaataagtgattttcacatttatt 23257172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 605
Target Start/End: Original strand, 49651840 - 49651919
Alignment:
Q  525 tcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||||||||||||||||| | | |  ||||||||||| |||| ||| ||||| |||||| ||| |||||||| ||||    
T  49651840 tcaatttttgatccaaaatcacacatctaactcgtttttctatttccttt-ttattgaaataaatgaatttcacatctatt 49651919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 605
Target Start/End: Complemental strand, 9799 - 9678
Alignment:
Q  484 tagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaa 582  Q
    ||||||||||| ||||||| |  |||||||| ||||||| ||||||||||||| |||||||||| | | |  ||||||||||| ||||  || ||||| |    
T  9799 tagtttcttctccttcatccaccaaagagggatgatttagggtcaatttttgacccaaaatcactcctctaactcgtttttctatttccctt-ttattga 9701  T
Q  583 aataagtgattttcacatttatt 605  Q
    | |||||||||||||||| ||||    
T  9700 attaagtgattttcacatctatt 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 470 - 605
Target Start/End: Original strand, 244583 - 244720
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaataaa-gaggggtgatttaaggtcaatttttgat-cca-aaatcacccttgtgtctcgtttttctc 566  Q
    ||||| |||||| | |||||||||||||||||| | ||| ||||| ||||||| |||||||||||  | ||| ||||||||| | |  ||||||||||||    
T  244583 cgtcaccaaaacctaagtttcttcttcttcatccacaaaagagggttgatttagggtcaattttttttaccataaatcacccctctaactcgtttttctc 244682  T
Q  567 tttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||  ||| ||||| ||||||||||||||||||| ||||    
T  244683 ttttcttt-ttattgaaataagtgattttcacatctatt 244720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 605
Target Start/End: Complemental strand, 11896 - 11807
Alignment:
Q  515 tgatttaaggtcaatttttgatccaaaatcacccttgtgtctcgtttttctctttcttttcttattaaaataagtgattttcacatttatt 605  Q
    |||||||  |||||||||||| |||||||||| | | |  ||||||||||| ||||  || ||||| ||||||||||||||||||| ||||    
T  11896 tgatttagtgtcaatttttgacccaaaatcactcatctaactcgtttttctatttccctt-ttattgaaataagtgattttcacatctatt 11807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 545
Target Start/End: Original strand, 729 - 805
Alignment:
Q  470 cgtcagcaaaactttagtttcttcttcttcatcaat-aaagaggggtgatttaaggtcaatttttgatccaaaatca 545  Q
    ||||| ||||||| ||||||||||| ||||||| |  ||| ||  |||||||||||||||||||||| | |||||||    
T  729 cgtcatcaaaactctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttttgaccaaaaatca 805  T

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