View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21359_low_9 (Length: 491)
Name: NF21359_low_9
Description: NF21359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21359_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 50940780 - 50941066
Alignment:
| Q |
1 |
cctcttttaatgctataaagactaaaaactaacaccaagaaagccaatggttgttacagtcaaccataacctcaagctacggccgtaacaacctactaga |
100 |
Q |
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| T |
50940780 |
cctcttttaatgctataaagactaaaaactaacaccaagaaagccaatggttgttacagtcaaccataacctcaagctacggccgtaacaac----taga |
50940875 |
T |
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| Q |
101 |
tttaannnnnnnnnnnnctttgtaagaagttgaatggttttaaatatggcttaggctataaatatagctatacaaaacccatccttaatgtattgta--- |
197 |
Q |
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| T |
50940876 |
tttaattttttgtttttctttgtaagaagttgaatggttttaaatatggcttaggctata------------caaaacccatccttaatgtattgtagta |
50940963 |
T |
|
| Q |
198 |
ctatctaacagtttacaaaatcaaaaggcttaggctataaatatggcaagcctaacctttgtttcacacgacgtttcatcatagatctcttgtagttgta |
297 |
Q |
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| T |
50940964 |
ctatctaacagtgcacaaaatcaaaaggcttaggctataaatatggcaagcctaacctttgtttcacacgacgtttcatcatagatcttttgtagttgta |
50941063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 350 - 485
Target Start/End: Original strand, 50941116 - 50941251
Alignment:
| Q |
350 |
gagatagctcattactatgatgagtgagtagtctctctttgtcttgataacatgaaaagtaatcatacgatgaatttttccaaaactccattcttttctt |
449 |
Q |
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| T |
50941116 |
gagatagctcattactatgatgagtgagtagtctctctttgtcttgataacatgaaaagtaatcatatgatgaatttttccaaaactccattcttttctt |
50941215 |
T |
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| Q |
450 |
ttgataagggaattcaaaacctaatctagtgttaat |
485 |
Q |
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| T |
50941216 |
ttgataagggaattcaaaacctaatctagtcttaat |
50941251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 3263350 - 3263404
Alignment:
| Q |
355 |
agctcattactatgatgagtgagtagtctctctttgtcttgataacatgaaaagt |
409 |
Q |
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| T |
3263350 |
agctcatcactatgattagtgagtagtctctctttatcttgagatcatggaaagt |
3263404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 27504529 - 27504497
Alignment:
| Q |
363 |
actatgatgagtgagtagtctctctttgtcttg |
395 |
Q |
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| T |
27504529 |
actatgatgagtgagtagtctctttttgtcttg |
27504497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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