View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2135_low_1 (Length: 374)
Name: NF2135_low_1
Description: NF2135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2135_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 40448659 - 40448311
Alignment:
| Q |
13 |
aatatgccgaaaaaagttgccatttcattacttcctaatgttggtgctgtttatttatat------acaggcaaacgaaataacttattcttttcaatac |
106 |
Q |
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| T |
40448659 |
aatatgccgaaaaaagttgccatttcattacttcctaatgttggtgctgtttatttatatttatatacaggcaaacgaaataacttaatcttttcaagac |
40448560 |
T |
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| Q |
107 |
tagactgtgctattcagctagagccaggggaggtaataaatttcattttcacttagaatgtatcaattgcatatatagtattttcttaatatcaaatcat |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40448559 |
tagattgtgctattcagctagagccaggggaggtaataaatttcattttcacttagaatgtatcaattgcata----gtattttcttaatatcaaatcat |
40448464 |
T |
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| Q |
207 |
atgaccaatttttcatttctttcagcatcattgattcttggcttgcttgcaaataacaagcataagcatatgagttctatggaggaatcgtggactaatt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40448463 |
atgaccaatttttcatttctttcagcatcattgattcttggcttgcttgcaaataacaagcataagcatatgagttctatggaggaatcgtggactaatt |
40448364 |
T |
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| Q |
307 |
ggttgtgtgatatggtaatatcatattacacaaaataaaattgtcttcaaatt |
359 |
Q |
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| T |
40448363 |
ggttgtgtgatatggtaatatcatattacacaaaataaaattgtcttcaaatt |
40448311 |
T |
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