View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2135_low_4 (Length: 363)
Name: NF2135_low_4
Description: NF2135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2135_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 502086 - 502414
Alignment:
| Q |
22 |
tcagtttcagatcacatgaatggatttcaatatcaaaccgagaaattcgatagctatgtgattgacatggatcccgccttctcttcaggcatcaacaaag |
121 |
Q |
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| T |
502086 |
tcagtttcagatcacatgaatggatttcaatatccaaccgagaaattcgatagctatgtgattgacatggatgccgccttctcttcaggcatcaacaaag |
502185 |
T |
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| Q |
122 |
atagtagtgccaatgctaatcctagaattacggtgtgactctcttttttcttctttaatatttcactacaagactttaattaatattccacatttgggct |
221 |
Q |
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| T |
502186 |
atagtagtgccaatgctaatcctagaattacggtgtgactctcttttttcttctttaatatttcactactagac-ttaattaatattccacatttgggct |
502284 |
T |
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| Q |
222 |
aagaactttttatcttcagaatcctaaaaccacaattagcactaatgaggagtctataaaaatttaagt---ttataatccgtatgaaacctcctacatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
502285 |
aagaactttttatcttcagaatcctaaaaccacaattagcactaatgatgagtctataaaaatttaagtttattataatcggtatgaaacctcctacatt |
502384 |
T |
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| Q |
319 |
----tacatggtttaatgtgatatcacatc |
344 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
502385 |
tacatacatggtttaatgtgatatgacatc |
502414 |
T |
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