View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2135_low_5 (Length: 351)
Name: NF2135_low_5
Description: NF2135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2135_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 34048320 - 34048008
Alignment:
| Q |
13 |
aatattgaataactttctcattttcaaaattataaaagacatattttcacctgaccnnnnnnnnnnngacatattttcctaaaataacagttataaaaga |
112 |
Q |
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| T |
34048320 |
aatattgaataactttctcattttcaatattataaaagacatattttcacctgaccaaaaaaaaa--gacatattttcctaaaataacagttataaaaga |
34048223 |
T |
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| Q |
113 |
tatataagtaattgaattaatttaataatttagcttcgatgcaattgccactaatgatatgtattgaagaaaattctaaaagcaaatacaatagataacg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||| |
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| T |
34048222 |
tatataagtaattgaattaatttaataatttagcttcgatgcaattgccactaatgaaatgtatcgaagaaaattctaaaagcaaatacaataaatgacg |
34048123 |
T |
|
| Q |
213 |
aaactcttcatttaaaaatttaacactactatattcttaaaattgaattcaaactcaagatctgtcacatatttaagcatagaaccaacactaatgtgta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | | |||||||||||||||||||||||||||||||| |
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| T |
34048122 |
aaactcttcatttaaaaatttaacactactatattcttaaaattaaattcaaactcaagaccttttaaatatttaagcatagaaccaacactaatgtgta |
34048023 |
T |
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| Q |
313 |
cttatatatacatca |
327 |
Q |
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||||||||||||||| |
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| T |
34048022 |
cttatatatacatca |
34048008 |
T |
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