View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2135_low_7 (Length: 315)

Name: NF2135_low_7
Description: NF2135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2135_low_7
NF2135_low_7
[»] chr7 (20 HSPs)
chr7 (21-112)||(12275798-12275889)
chr7 (18-124)||(10056680-10056786)
chr7 (25-121)||(47497764-47497860)
chr7 (40-112)||(49106984-49107056)
chr7 (21-75)||(640904-640958)
chr7 (21-108)||(40134446-40134531)
chr7 (21-112)||(26862973-26863064)
chr7 (40-102)||(2276275-2276337)
chr7 (22-112)||(5443591-5443680)
chr7 (59-112)||(5452672-5452725)
chr7 (59-117)||(3235542-3235600)
chr7 (59-112)||(26647788-26647841)
chr7 (59-112)||(31042127-31042180)
chr7 (21-97)||(24516559-24516635)
chr7 (21-100)||(11201293-11201372)
chr7 (59-113)||(40803241-40803295)
chr7 (21-97)||(2276337-2276413)
chr7 (33-97)||(18089774-18089838)
chr7 (21-100)||(7017146-7017225)
chr7 (21-100)||(7032504-7032583)
[»] chr8 (23 HSPs)
chr8 (21-105)||(34504437-34504521)
chr8 (21-112)||(2288587-2288678)
chr8 (21-101)||(40175954-40176034)
chr8 (51-117)||(23848249-23848313)
chr8 (26-112)||(38357557-38357643)
chr8 (32-112)||(8402549-8402627)
chr8 (59-112)||(20271111-20271164)
chr8 (59-112)||(21057739-21057792)
chr8 (31-112)||(40694683-40694764)
chr8 (40-112)||(27072894-27072966)
chr8 (21-108)||(42072654-42072739)
chr8 (21-87)||(13260405-13260471)
chr8 (13-91)||(26098064-26098142)
chr8 (59-112)||(2288697-2288750)
chr8 (59-112)||(36009920-36009973)
chr8 (16-100)||(4994155-4994239)
chr8 (53-112)||(4994247-4994304)
chr8 (21-85)||(26018520-26018584)
chr8 (59-107)||(35586501-35586549)
chr8 (40-112)||(40566535-40566607)
chr8 (24-77)||(42209424-42209477)
chr8 (21-101)||(20271007-20271087)
chr8 (21-101)||(21057635-21057715)
[»] chr3 (26 HSPs)
chr3 (18-122)||(31205347-31205451)
chr3 (25-124)||(19560605-19560704)
chr3 (21-112)||(36480767-36480858)
chr3 (34-124)||(3901566-3901655)
chr3 (21-100)||(4277039-4277118)
chr3 (25-117)||(19554369-19554461)
chr3 (21-100)||(11532495-11532574)
chr3 (52-122)||(1458628-1458698)
chr3 (59-117)||(36480690-36480748)
chr3 (31-112)||(51541315-51541396)
chr3 (21-93)||(29955045-29955117)
chr3 (21-93)||(30004199-30004271)
chr3 (21-117)||(32880980-32881076)
chr3 (61-112)||(35357305-35357356)
chr3 (34-100)||(3901499-3901565)
chr3 (60-112)||(14345139-14345191)
chr3 (40-100)||(31524070-31524129)
chr3 (61-100)||(19560729-19560768)
chr3 (40-109)||(13540255-13540327)
chr3 (53-105)||(1458535-1458585)
chr3 (16-101)||(1753315-1753400)
chr3 (59-112)||(36007453-36007506)
chr3 (59-100)||(46555590-46555631)
chr3 (33-112)||(16993339-16993416)
chr3 (21-85)||(35357377-35357441)
chr3 (21-77)||(48240409-48240464)
[»] chr4 (26 HSPs)
chr4 (21-124)||(52374893-52374996)
chr4 (21-109)||(33413994-33414082)
chr4 (21-112)||(21433933-21434024)
chr4 (40-124)||(15134646-15134730)
chr4 (21-112)||(2324746-2324837)
chr4 (22-100)||(3688570-3688648)
chr4 (59-113)||(21433860-21433914)
chr4 (21-124)||(2247639-2247740)
chr4 (40-112)||(16577241-16577313)
chr4 (21-112)||(45654071-45654162)
chr4 (59-121)||(7403181-7403243)
chr4 (70-112)||(16458028-16458070)
chr4 (16-100)||(25592251-25592335)
chr4 (40-112)||(41840581-41840653)
chr4 (21-112)||(15134555-15134646)
chr4 (21-100)||(16457920-16457999)
chr4 (59-113)||(2247567-2247621)
chr4 (59-117)||(3688669-3688727)
chr4 (31-97)||(19382300-19382366)
chr4 (40-93)||(19382371-19382424)
chr4 (26-100)||(993219-993291)
chr4 (21-91)||(38036246-38036314)
chr4 (53-112)||(45654001-45654058)
chr4 (51-97)||(9024000-9024046)
chr4 (59-116)||(31758673-31758728)
chr4 (16-101)||(48791231-48791316)
[»] chr2 (30 HSPs)
chr2 (21-112)||(42094263-42094353)
chr2 (31-100)||(2683446-2683515)
chr2 (59-112)||(33069155-33069208)
chr2 (21-112)||(25666858-25666949)
chr2 (57-112)||(35715069-35715124)
chr2 (25-100)||(44247538-44247613)
chr2 (59-117)||(9430235-9430293)
chr2 (40-98)||(33171678-33171736)
chr2 (59-101)||(41496058-41496100)
chr2 (59-112)||(42029440-42029493)
chr2 (21-112)||(18719721-18719810)
chr2 (35-91)||(33171608-33171664)
chr2 (22-115)||(21309761-21309852)
chr2 (63-112)||(12703460-12703509)
chr2 (59-100)||(42251261-42251302)
chr2 (24-112)||(3466450-3466538)
chr2 (40-112)||(15194523-15194595)
chr2 (21-97)||(37810206-37810282)
chr2 (40-100)||(42029342-42029402)
chr2 (57-112)||(6979093-6979147)
chr2 (21-100)||(16209375-16209454)
chr2 (40-107)||(37810139-37810206)
chr2 (21-91)||(33069227-33069297)
chr2 (59-100)||(23001430-23001471)
chr2 (60-101)||(29160840-29160881)
chr2 (51-104)||(45300363-45300416)
chr2 (21-101)||(1930669-1930749)
chr2 (33-109)||(39090369-39090445)
chr2 (40-112)||(40358729-40358801)
chr2 (21-93)||(41496119-41496191)
[»] chr6 (22 HSPs)
chr6 (26-112)||(1473603-1473689)
chr6 (59-112)||(4033090-4033143)
chr6 (51-112)||(5706709-5706770)
chr6 (21-112)||(4483356-4483445)
chr6 (21-87)||(6643375-6643441)
chr6 (21-100)||(3150209-3150288)
chr6 (21-112)||(12731614-12731705)
chr6 (53-112)||(24110051-24110110)
chr6 (40-113)||(10729942-10730013)
chr6 (59-112)||(12731542-12731595)
chr6 (59-112)||(17389995-17390048)
chr6 (59-112)||(31946916-31946969)
chr6 (59-110)||(4494386-4494435)
chr6 (57-101)||(24783962-24784006)
chr6 (21-75)||(24783891-24783945)
chr6 (26-124)||(28865386-28865484)
chr6 (59-108)||(9645015-9645064)
chr6 (59-108)||(9651032-9651081)
chr6 (40-112)||(4483445-4483517)
chr6 (21-73)||(11650916-11650968)
chr6 (59-107)||(12424886-12424933)
chr6 (61-125)||(17600705-17600769)
[»] chr5 (21 HSPs)
chr5 (21-112)||(36059267-36059358)
chr5 (21-124)||(42419993-42420096)
chr5 (33-113)||(38029530-38029607)
chr5 (40-112)||(3907644-3907714)
chr5 (45-112)||(35244904-35244971)
chr5 (50-124)||(17474862-17474936)
chr5 (21-97)||(3907714-3907792)
chr5 (40-112)||(4190138-4190212)
chr5 (61-112)||(42420117-42420168)
chr5 (59-125)||(22399745-22399811)
chr5 (42-112)||(40927687-40927757)
chr5 (22-107)||(32309658-32309743)
chr5 (52-105)||(42249405-42249458)
chr5 (21-97)||(25545278-25545354)
chr5 (59-107)||(28907361-28907409)
chr5 (59-107)||(28943756-28943804)
chr5 (59-109)||(25545211-25545259)
chr5 (31-97)||(3416266-3416332)
chr5 (59-112)||(41169488-41169541)
chr5 (24-96)||(13122043-13122115)
chr5 (21-77)||(41106466-41106522)
[»] chr1 (22 HSPs)
chr1 (31-112)||(34437667-34437748)
chr1 (52-107)||(34783438-34783493)
chr1 (22-100)||(34437598-34437676)
chr1 (21-101)||(31970180-31970260)
chr1 (21-112)||(38663639-38663730)
chr1 (40-90)||(939413-939463)
chr1 (58-112)||(15366489-15366543)
chr1 (21-91)||(45925168-45925238)
chr1 (40-101)||(2542701-2542762)
chr1 (59-112)||(49822626-49822679)
chr1 (57-109)||(45563162-45563214)
chr1 (21-112)||(7444269-7444360)
chr1 (21-87)||(2542762-2542828)
chr1 (59-97)||(40669027-40669065)
chr1 (59-112)||(7444379-7444432)
chr1 (59-104)||(31970116-31970161)
chr1 (52-105)||(38948183-38948236)
chr1 (59-107)||(16661808-16661856)
chr1 (21-97)||(40668932-40669008)
chr1 (21-100)||(731390-731468)
chr1 (40-109)||(16257603-16257672)
chr1 (21-105)||(49403467-49403551)
[»] scaffold0015 (1 HSPs)
scaffold0015 (63-124)||(201059-201120)
[»] scaffold0003 (1 HSPs)
scaffold0003 (61-109)||(136421-136469)
[»] scaffold0137 (1 HSPs)
scaffold0137 (32-124)||(8251-8342)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 12275798 - 12275889
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| |||||||| ||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||    
T  12275798 tttatatgggacccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgttagaatgtgtgtt 12275889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 10056680 - 10056786
Alignment:
Q  18 aattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    |||||||||||| |||||||| |||||| | |||||||||  |||||||| ||| ||||| |||||||||||||||| ||||||||||||||||| ||||    
T  10056680 aattttatatgggacccacatgatttggagggacccatatggattttaactaattaaagagagtgtgttgaaaagtgcgtgttagaatgtgtgttgttag 10056779  T
Q  118 aattcct 124  Q
     ||||||    
T  10056780 cattcct 10056786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 47497764 - 47497860
Alignment:
Q  25 tatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaatt 121  Q
    ||||| |||||||| |||||||| ||| ||| | ||||||||||||||||||| | | | ||||||| |||||||||||||||||||| ||||||||    
T  47497764 tatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaatgtgtgttgttagaatt 47497860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 49106984 - 49107056
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| |||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttagaatgtatgtt 49107056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 640958 - 640904
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaa 75  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  640958 tttatatggaatccacatgatttggtgtgacccatataaattttaaccaatcaaa 640904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 40134446 - 40134531
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtg 108  Q
    ||||||||| |||||||| |||||||| ||||||| | ||||||||||||||  ||| ||||||||| ||||||||||||| ||||||    
T  40134446 tttatatgggacccacataatttggtgggacccatgtgaattttaaccaatc--agagagtgtgttggaaagtgtgtgttaaaatgtg 40134531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 26862973 - 26863064
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||| | |||||||| |||||||| ||||||| | ||||||||||||| ||||| ||| || |||||||||||| ||| ||||||||||    
T  26862973 tttatataggacccacatgatttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgtt 26863064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 2276337 - 2276275
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttag 102  Q
    |||||||| || |||| | ||||||||||||||||||| ||||||||||||||||||||||||    
T  2276337 atttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttag 2276275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 5443591 - 5443680
Alignment:
Q  22 ttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| | |||||| |||||||| || | || | ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  5443591 ttatatgggatccacataatttggtg-gagctatgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgtt 5443680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 5452672 - 5452725
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  5452672 aattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgtt 5452725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 3235600 - 3235542
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||| ||||    
T  3235600 aattttaaccaatcaaagagagtgtattggaaagtgtgtgttaaaatgtgtgttgttag 3235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 26647788 - 26647841
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  26647788 aattctaaccaatcaaaaatagtgtgttgaaaagtgtgtattagaatgtatgtt 26647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 31042180 - 31042127
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||    
T  31042180 aattttaaccaatcaaagataatgtattgaaaagtgtgtgttaaaatatgtgtt 31042127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 24516635 - 24516559
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    |||| |||||| |||||| |||||||| ||||||| | ||||||||||||||||||| ||| ||||| |||| ||||    
T  24516635 tttagatggaatccacatgatttggtgggacccatgtgaattttaaccaatcaaagaaagtatgttggaaagagtgt 24516559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 11201372 - 11201293
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||  |||||| | |||||||| ||||||| | ||||||||| ||| ||||| ||||||||| ||||||||||||    
T  11201372 tttatatgagacccacgtgatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgtgtt 11201293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 40803241 - 40803295
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttt 113  Q
    ||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||    
T  40803241 aattttaaccaataaaaaatagtgttttaaaaagtgtatgttagaatgtgtgttt 40803295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 2276337 - 2276413
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    |||||| || |||||||| |||||||| ||  ||| | ||||||||||||| |||||||||||||| ||| ||||||    
T  2276337 tttataagggacccacataatttggtgggattcatgtgaattttaaccaattaaagatagtgtgttaaaatgtgtgt 2276413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 18089774 - 18089838
Alignment:
Q  33 ccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    |||||| |||||||  ||||||| | |||||||||||| |||||| |||||||| ||||||||||    
T  18089774 ccacataatttggttggacccatgtgaattttaaccaaccaaagagagtgtgttaaaaagtgtgt 18089838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 7017146 - 7017225
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| | |||||| |||||||  |||  || | ||||||||||||||||||| ||||| ||||||| ||||||||    
T  7017146 tttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7017225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 7032504 - 7032583
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| | |||||| |||||||  |||  || | ||||||||||||||||||| ||||| ||||||| ||||||||    
T  7032504 tttatatgggatccacataatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7032583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 34504437 - 34504521
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaat 105  Q
    ||||||||| |||||||| ||||||||||||||||   ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  34504437 tttatatgggacccacatgatttggtgtgacccatgcgaattttaaccaatcaaaaaaagtgtgttgaaaagtgtatgttagaat 34504521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 2288678 - 2288587
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||  | ||||||||  |||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||||    
T  2288678 tttatatgggacccatgtgatttggtgaaacccatgtaaattttaaccaatcaaagagagtgtgttcgaaagtgtgtgttagaatatgtgtt 2288587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 40175954 - 40176034
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||||| |||||||| |||||||| ||||||| | ||||||||||||| |||   |||||||| ||||||||||||||    
T  40175954 tttatatgggacccacataatttggtgggacccatgtgaattttaaccaattaaaaggagtgtgttaaaaagtgtgtgtta 40176034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 23848313 - 23848249
Alignment:
Q  51 cccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||||| |||||||| ||||||||||||||||||||||||||  |||||| |||||||||| ||||    
T  23848313 cccatatgaattttaatcaatcaaagatagtgtgttgaaaagt--gtgttaaaatgtgtgttgttag 23848249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 38357643 - 38357557
Alignment:
Q  26 atggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||| |||||||| | | ||| | | ||| ||| ||||||||| ||||||||| |||||||||| |||||||||||||    
T  38357643 atggaacccacatgatttggtgggtctcatgtgagtttcaactaatcaaagagagtgtgttggaaagtgtgtgctagaatgtgtgtt 38357557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 8402549 - 8402627
Alignment:
Q  32 cccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||| |||||||| | |||||   | |||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  8402549 cccacatgatttggtggggcccatgagagttttaaccaatcaaa--tagtgtgttgaaaagtgtgtgttaaaatgtgtgtt 8402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 20271111 - 20271164
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  20271111 aattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgtt 20271164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 21057739 - 21057792
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  21057739 aattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgtt 21057792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 40694683 - 40694764
Alignment:
Q  31 acccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| |||||||| ||||||| | ||||||||| ||| ||| | ||||| ||||||||||||||||| || |||||||    
T  40694683 acccacatgatttggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgtgttaaaacgtgtgtt 40694764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 27072894 - 27072966
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| | || || ||||||||||||||||||| | | ||||||||||||||||||||| ||| ||||||    
T  27072894 atttggtgggtccaatgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgttaaaatatgtgtt 27072966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 42072739 - 42072654
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtg 108  Q
    ||||||||  ||||| || |||||||| ||||||| | ||| ||||||||||||||| |||||||||  |||||||||||| ||||||    
T  42072739 tttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgttg--aagtgtgtgttaaaatgtg 42072654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 13260471 - 13260405
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttg 87  Q
    ||||||||| |||||||| | |||||| ||||||| |  |||||||||||| |||||||||||||||    
T  13260471 tttatatgggacccacatgagttggtgggacccatgtgcattttaaccaataaaagatagtgtgttg 13260405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 26098142 - 26098064
Alignment:
Q  13 catcaaattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaa 91  Q
    ||||||||||||||||| || ||||| |||| ||  || |||| ||||||||||||||||||||| |  ||||||||||    
T  26098142 catcaaattttatatgggacacacataattttgtaggatccatttaaattttaaccaatcaaagacaacgtgttgaaaa 26098064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 2288697 - 2288750
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||| ||  ||||||||||||| | ||||||||||||||    
T  2288697 aattttaaccaatcaaagagagattgttgaaaagtgtcttttagaatgtgtgtt 2288750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 36009920 - 36009973
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||||| |||||| ||||||||| ||||||||||||| ||||| ||||    
T  36009920 aattttaaccaaccaaagagagtgtgttggaaagtgtgtgttaaaatgtttgtt 36009973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 4994239 - 4994155
Alignment:
Q  16 caaattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||| ||||||||| |||||||| |||||||| ||| ||||  ||||||||||||||||| | ||| |||| |||| | ||||||    
T  4994239 caaaatttatatgggacccacatgatttggtgggactcataagaattttaaccaatcaaaaagagtatgttaaaaaatatgtgtt 4994155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 4994247 - 4994304
Alignment:
Q  53 catataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||| |||||||||||||||||||  |||||||| |||| ||||||||| ||||||||||    
T  4994247 catacaaattttaaccaatcaaag--agtgtgttaaaaattgtgtgttaaaatgtgtgtt 4994304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 26018520 - 26018584
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgt 85  Q
    ||||||||| |||||||| ||||| || ||||||| | |||||||||||||||| || |||||||    
T  26018520 tttatatgggacccacataatttgatgggacccatgtgaattttaaccaatcaaggagagtgtgt 26018584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 35586501 - 35586549
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||||| |||| ||||| | |||||||||||||||||||||||||||    
T  35586501 aattttaatcaattaaagagaatgtgttgaaaagtgtgtgttagaatgt 35586549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 40566535 - 40566607
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| ||| ||| | ||||||||||||||||| | || |||||||||| | ||||||| ||||||||||    
T  40566535 atttggtgagactcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgtgtt 40566607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 42209424 - 42209477
Alignment:
Q  24 atatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaaga 77  Q
    ||||||||||||||| || ||||| || |||| | |||||||||||||||||||    
T  42209424 atatggaacccacatgatatggtgggaaccatgtgaattttaaccaatcaaaga 42209477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 20271087 - 20271007
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaatttt--aaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||||| |||||||| |||||||| || |||| | ||||||  ||||||||||||  || |||||||||| |||||||||    
T  20271087 tttatatgggacccacatgatttggtgggatccatgtgaattttttaaccaatcaaag--agagtgttgaaaaatgtgtgtta 20271007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 21057715 - 21057635
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaatttt--aaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||||| |||||||| |||||||| || |||| | ||||||  ||||||||||||  || |||||||||| |||||||||    
T  21057715 tttatatgggacccacatgatttggtgggatccatgtgaattttttaaccaatcaaag--agagtgttgaaaaatgtgtgtta 21057635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 31205451 - 31205347
Alignment:
Q  18 aattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    |||||||||||| |||||||| |||||||  ||||||| ||||||||||||||||||||| ||||||||| ||| | ||||||| || ||||||| ||||    
T  31205451 aattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatcaaagagagtgtgttggaaaatatgtgttaaaacgtgtgttgttag 31205352  T
Q  118 aattc 122  Q
     ||||    
T  31205351 cattc 31205347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 19560704 - 19560605
Alignment:
Q  25 tatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    ||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||  ||||| |||||||||||| |||||||||| |||| |||| ||||||    
T  19560704 tatgggacccacatgatttggtgggacccatatgaatttcaaccaatcaaagcgagtgtattgaaaagtgtgcgttagaatgtatgttgttagcattcct 19560605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 36480767 - 36480858
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| |||||||| ||||||| | ||||||| ||||||||||| ||  ||||||||||||||||||| ||||||||||    
T  36480767 tttatatgggacccacatgatttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgtgtt 36480858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 3901566 - 3901655
Alignment:
Q  34 cacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    ||||| |||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||| ||||||    
T  3901566 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta-aatgtatgttgttagcattcct 3901655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 4277039 - 4277118
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| |||||||| ||||  || ||||||||||||| |||| |||||||||| ||||||||||||| ||||||||    
T  4277039 tttatatgggacccacatgatttaatgagacccatataaatattaatcaatcaaagaaagtgtgttgaaaaatgtgtgtt 4277118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 19554461 - 19554369
Alignment:
Q  25 tatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||| ||||||||  ||||||| ||||||||| |||||||| ||||||||||  |||| ||||  |||| ||||||||||||||||| ||||    
T  19554461 tatgggacccacatggtttggtgggacccatatgaattttaatcaatcaaagagggtgtattgaccagtgcgtgttagaatgtgtgttgttag 19554369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 11532495 - 11532574
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| | |||||| ||||||||  |||||| | ||||||||||||||||||| ||||||||  ||||||||||||    
T  11532495 tttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 11532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 1458628 - 1458698
Alignment:
Q  52 ccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattc 122  Q
    |||||| ||||| ||||||||||  | ||||||||||||||||| |||||||||||||||| |||| ||||    
T  1458628 ccatatgaatttaaaccaatcaagaagagtgtgttgaaaagtgtttgttagaatgtgtgttgttagcattc 1458698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 36480748 - 36480690
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||||||||||||||||| ||||||||| |||| |||||||| |||||||||| ||||    
T  36480748 aattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttag 36480690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 51541315 - 51541396
Alignment:
Q  31 acccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| |||||||| ||| ||| | ||||||||||||||||| | ||||| ||||||| | |||||||||| |||||||    
T  51541315 acccacatgatttggtgggactcatctgaattttaaccaatcaaaaaaagtgtattgaaaaatatgtgttagaaggtgtgtt 51541396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 29955117 - 29955045
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagt 93  Q
    ||||| ||| |||||||| ||||| || ||||||| | ||||||||||||||||| | |||||||||||||||    
T  29955117 tttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagt 29955045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 30004271 - 30004199
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagt 93  Q
    ||||| ||| |||||||| ||||| || ||||||| | ||||||||||||||||| | |||||||||||||||    
T  30004271 tttatgtgggacccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagt 30004199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 32881076 - 32880980
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||||||| | |||||| |||| ||| ||||||| | ||| |||||||||||| || ||| ||||||||| |||||| || |||||||||| ||||    
T  32881076 tttatatgggatccacatgattttgtgggacccatgtgaatattaaccaatcaaggagagtatgttgaaaaatgtgtgataaaatgtgtgttcttag 32880980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 35357356 - 35357305
Alignment:
Q  61 ttttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||| ||||||||||||| | | ||||||||||||||||    
T  35357356 ttttaaccaatcaaagagagtgtgttgaaaaatatttgttagaatgtgtgtt 35357305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 3901565 - 3901499
Alignment:
Q  34 cacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||| |||||||| ||||||| | ||||||||||||||||||| | ||||||||||| | ||||||    
T  3901565 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttgaaaaatatgtgtt 3901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 14345191 - 14345139
Alignment:
Q  60 attttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||||||||||| ||||||||||||| | ||||||| ||| ||||||    
T  14345191 attttaaccaatcaaagaaagtgtgttgaaaaatatgtgttaaaatatgtgtt 14345139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 31524129 - 31524070
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||||||| ||||||| ||||||||||||||||||||| | |||||| |||| ||||||||    
T  31524129 atttggtgcgacccatgtaaattttaaccaatcaaagaaaatgtgtt-aaaaatgtgtgtt 31524070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 19560729 - 19560768
Alignment:
Q  61 ttttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  19560729 ttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 19560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 13540255 - 13540327
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaag---atagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    |||||||| |||| |||| ||||||||||||||||||   |||||||| ||||||  |||||||| |||||||    
T  13540255 atttggtgggacctatatgaattttaaccaatcaaagagaatagtgtgctgaaaaacgtgtgttaaaatgtgt 13540327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 1458585 - 1458535
Alignment:
Q  53 catataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaat 105  Q
    ||||| ||||| |||||||||||||  |||||||||||| |||||||||||||    
T  1458585 catatgaatttcaaccaatcaaaga--gtgtgttgaaaattgtgtgttagaat 1458535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 1753400 - 1753315
Alignment:
Q  16 caaattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    |||| ||||||||| | |||||| ||||| ||  || ||| ||||||||||||||||||| | ||| | ||||||||||| |||||    
T  1753400 caaaatttatatgggaaccacatgatttgatgaaactcatgtaaattttaaccaatcaaaaagagtatattgaaaagtgtatgtta 1753315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 36007453 - 36007506
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||| ||||||| | ||||||||||||||  ||||| ||||||||||    
T  36007453 aattttaaccactcaaagaaaatgtgttgaaaagtgaatgttaaaatgtgtgtt 36007506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 46555590 - 46555631
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||||||| |||||||||| |||||||| |||||||||||||    
T  46555590 aattttaatcaatcaaagagagtgtgttaaaaagtgtgtgtt 46555631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 16993339 - 16993416
Alignment:
Q  33 ccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||| |||||||| || |||||| | | ||||||||| |||||  |||||||| ||||||| | ||||||||||||||    
T  16993339 ccacatgatttggtgggatccatatgactgttaaccaattaaaga--gtgtgttggaaagtgtatattagaatgtgtgtt 16993416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 35357377 - 35357441
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgt 85  Q
    ||||||||| ||  |||| |||||||  ||||||| | ||||||||||||||||||| |||||||    
T  35357377 tttatatgggacttacatgatttggtaggacccatgtgaattttaaccaatcaaagagagtgtgt 35357441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 48240409 - 48240464
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaaga 77  Q
    |||||||||||||||||| |||||||| || |||| ||||||||||  |||||||||    
T  48240409 tttatatggaacccacatgatttggtg-gatccatgtaaattttaagtaatcaaaga 48240464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 52374996 - 52374893
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaat 120  Q
    |||||| || |||||||| |||||||| || |||| | |||||||| | |||||||| ||||||||||||||||||||||| |||||||||| |||| ||    
T  52374996 tttatacgggacccacataatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcat 52374897  T
Q  121 tcct 124  Q
    ||||    
T  52374896 tcct 52374893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 33414082 - 33413994
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    ||||||| | |||||| | |||||||| || |||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  33414082 tttatataggacccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttacaatgtgt 33413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 21433933 - 21434024
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||  |||||||| |||||||| || |||| | |||||||||||||||| || ||||||||||||||||| ||||| ||||||||||    
T  21433933 tttatatgagacccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgtt 21434024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 15134646 - 15134730
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    |||||||| | ||||| | ||||||||||||||| ||| |||||||||||||||||| |||| |||||||||| |||| ||||||    
T  15134646 atttggtgagtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgtgttgttagcattcct 15134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 2324837 - 2324746
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| ||||||||  || ||| | ||||||||||||||||||| ||| | |||||||||||| |||| ||||||||||    
T  2324837 tttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtgcgttaaaatgtgtgtt 2324746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 3688648 - 3688570
Alignment:
Q  22 ttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||||||| |||||||| |||||||| ||||||| | ||||||||| ||||||||| | ||||||||||| ||||||||    
T  3688648 ttatatgggacccacatgatttggtgagacccatgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgtgtt 3688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 21433914 - 21433860
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttt 113  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||    
T  21433914 aattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtgttt 21433860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 2247639 - 2247740
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaat 120  Q
    ||||||||  |||||||| |||||||| || |||| | ||||||||||||||||||| |||| |||| |||  |||||||| |||||||||| |||| ||    
T  2247639 tttatatgcgacccacatgatttggtgggatccatgttaattttaaccaatcaaagagagtgggttggaaa--gtgtgttaaaatgtgtgttgttagcat 2247736  T
Q  121 tcct 124  Q
    ||||    
T  2247737 tcct 2247740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 16577313 - 16577241
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| |||| || ||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||    
T  16577313 atttggtgggacctatgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgttagaatgtgtgtt 16577241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 45654071 - 45654162
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| ||||| || || |||| | ||||||||||||||||| | |||||||| |||| | ||||||||||||| ||||    
T  45654071 tttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaaaaaagtgtgttaaaaaatatgtgttagaatgtatgtt 45654162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 7403181 - 7403243
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaatt 121  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||  |||||||    
T  7403181 aattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaatatgtgttgctagaatt 7403243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 16458028 - 16458070
Alignment:
Q  70 atcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  16458028 atcaaagagagtgtgttgaaaagtgtgtgttagaatgtgtgtt 16458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 25592251 - 25592335
Alignment:
Q  16 caaattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||| ||||||| | |||||||| |||||||| |||| | || ||||||||||||| ||||| ||||| || |||||||||||||    
T  25592251 caaaatttatataggacccacatgatttggtgggaccaaaatgaattttaaccaatgaaagagagtgtattaaaaagtgtgtgtt 25592335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 41840653 - 41840581
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||  |||||| |||||||||| |||||||||| ||||||||||||| | ||||||| ||||| ||||    
T  41840653 atttggtggaacccatgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtatgtt 41840581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 15134646 - 15134555
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| ||||| || |||| ||  ||||||| | ||||||||||||| ||||| | ||||||||||| ||||||||| ||| ||||||    
T  15134646 tttatatgggacccaaatgatttagtcggacccatgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgtt 15134555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 16457999 - 16457920
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| |||||||| ||||| || || |||| | ||||||||||||||||||| ||||||||  ||| ||||||||    
T  16457999 tttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgtgtt 16457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 2247621 - 2247567
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttt 113  Q
    |||||||| |||| ||||| ||||||||||||||||||||||| ||| |||||||    
T  2247621 aattttaatcaattaaagagagtgtgttgaaaagtgtgtgttaaaatatgtgttt 2247567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 3688669 - 3688727
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||||||||||||||||| ||||||||| ||||||| | ||| |||||||||| ||||    
T  3688669 aattttaaccaatcaaagaaagtgtgttggaaagtgtatattaaaatgtgtgttgttag 3688727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 19382366 - 19382300
Alignment:
Q  31 acccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    |||||||| |||||||| || |||| | ||||||||||||||||| | ||||||||| |||||||||    
T  19382366 acccacatgatttggtgggatccatgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgt 19382300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 19382371 - 19382424
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagt 93  Q
    |||||| | ||||||||||||||||||||||||||| | |||||||| ||||||    
T  19382371 atttggcgggacccatataaattttaaccaatcaaaaagagtgtgttaaaaagt 19382424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 993291 - 993219
Alignment:
Q  26 atggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||| |||||||| |||||||| ||| ||| | ||||||||||||||||||  ||||||||||||  ||||||||    
T  993291 atgggacccacatgatttggtgggactcatgtgaattttaaccaatcaaag--agtgtgttgaaagatgtgtgtt 993219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 38036314 - 38036246
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaa 91  Q
    |||||||||||||||||| |||||| |  || ||| | ||||||||||||||||||| | |||||||||||    
T  38036314 tttatatggaacccacataatttgggg--actcatgtgaattttaaccaatcaaagaaaatgtgttgaaaa 38036246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 45654058 - 45654001
Alignment:
Q  53 catataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||| ||||||||||| | ||||||||||||||||| |||||| |||||||||    
T  45654058 catataaattt-aaccaatcaaa-agagtgtgttgaaaagtgtctgttaggatgtgtgtt 45654001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 9024000 - 9024046
Alignment:
Q  51 cccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    ||||| ||||||||||| ||||||||| | |||||||||||||||||    
T  9024000 cccatgtaaattttaacaaatcaaagagaatgtgttgaaaagtgtgt 9024046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 31758728 - 31758673
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttttta 116  Q
    ||||||||||||||||| | | |||||||||||||  |||||| ||||||||||||||    
T  31758728 aattttaaccaatcaaatagaatgtgttgaaaagt--gtgttaaaatgtgtgttttta 31758673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 48791316 - 48791231
Alignment:
Q  16 caaattttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    |||| ||||||||| ||| ||||  ||||||| |  |||||| ||||| |||| || ||||| ||||||||| |||||||||||||    
T  48791316 caaaatttatatgggaccgacatagtttggtgggttccatatgaatttcaaccgattaaagagagtgtgttggaaagtgtgtgtta 48791231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 42094263 - 42094353
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| |||||||| |||| || | |||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  42094263 tttatatgggacccacatgatttggtgggacc-atgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtgtt 42094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 2683446 - 2683515
Alignment:
Q  31 acccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||||||| ||||||||  |||||||||||||||||||||||||| | |||||  |||||||||||||||    
T  2683446 acccacatgatttggtggaacccatataaattttaaccaatcaaaaagagtgtcgtgaaaagtgtgtgtt 2683515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 33069208 - 33069155
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  33069208 aattttaaccgatcaaagaaagtgtgttgaaaagtgtgtgatagaatgtgtgtt 33069155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 25666858 - 25666949
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||| |||| |||||||| || |||| |  ||||||||  |||||||| ||||||||||||| ||| ||||| ||||||||||    
T  25666858 tttatatggaacctacatgatttggtgggatccatgtggattttaacacatcaaagagagtgtgttgaaaattgtatgttaaaatgtgtgtt 25666949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 35715069 - 35715124
Alignment:
Q  57 taaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||    
T  35715069 taaattttaaccaatcaaagagagtgtattgaaaagtgtgtcttaaaatgtgtgtt 35715124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 44247613 - 44247538
Alignment:
Q  25 tatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||| |||||||| ||||||||  |||||| | ||||| ||||||||||||||||| ||||||||| ||||||||    
T  44247613 tatgggacccacataatttggtggaacccatgtgaatttcaaccaatcaaagatagtttgttgaaaaatgtgtgtt 44247538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 9430235 - 9430293
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttag 117  Q
    ||||||||||||||||| | | | |||||||||||||||||||||||||||||| ||||    
T  9430235 aattttaaccaatcaaatagaatatgttgaaaagtgtgtgttagaatgtgtgttattag 9430293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 33171678 - 33171736
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtg 98  Q
    |||||||| ||||||| | || |||||||||||||||| ||||||||||||||||||||    
T  33171678 atttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgtgtg 33171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 41496100 - 41496058
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  41496100 aattttaaccaatcaaagatagtgtattgaaaagtgtgtgtta 41496058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 42029440 - 42029493
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||| |||||    
T  42029440 aattttaaccaataaaaaaaagtgtgttgaaaagtgtgtgttagaatgcgtgtt 42029493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 18719810 - 18719721
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| ||||||||  || | | | ||||||||||||||||| | |||||||||||||   ||||||||||||||||||    
T  18719810 tttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaa--atgtgttagaatgtgtgtt 18719721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 33171664 - 33171608
Alignment:
Q  35 acatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaa 91  Q
    |||| |||||||| ||||||||| |||||||| |||||||||| |||||||||||||    
T  33171664 acatgatttggtgggacccatatgaattttaaacaatcaaagaaagtgtgttgaaaa 33171608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 21309761 - 21309852
Alignment:
Q  22 ttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttttt 115  Q
    |||||||| |||||||| ||||| || |||  | || ||||||||||||||||||  |||||||| |||||||||| |||||  ||||||||||    
T  21309761 ttatatgggacccacatgatttgatgggac--aaatgaattttaaccaatcaaagtaagtgtgttaaaaagtgtgtattagagagtgtgttttt 21309852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 12703509 - 12703460
Alignment:
Q  63 ttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||| ||||| ||||||| ||||||||| ||||||||||    
T  12703509 ttaaccaatcaaagaaagtgtattgaaaaatgtgtgttaaaatgtgtgtt 12703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 42251261 - 42251302
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  42251261 aattttaatcaatcaaagagagtgtgttgaaaagtgtgtgtt 42251302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 3466450 - 3466538
Alignment:
Q  24 atatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||| |||||||  |||| |||  |||||| | ||||||||||||||||||| | | ||||  ||||||||||||| ||||||||||    
T  3466450 atatgggacccacacgatttagtggaacccatgtgaattttaaccaatcaaagagactatgtttgaaagtgtgtgttaaaatgtgtgtt 3466538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 15194595 - 15194523
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| ||||||| | | ||||||||||||||| | |||||| |||||||||| ||||| ||| ||||||    
T  15194595 atttggtgcgacccatgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgtatgttaaaatttgtgtt 15194523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 37810206 - 37810282
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    ||||||||| |||||  | |||||||| ||||||| | ||||||||||||||||||  |||||| || |||||||||    
T  37810206 tttatatgggacccatctaatttggtgggacccatgtgaattttaaccaatcaaagtgagtgtgatggaaagtgtgt 37810282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 42029402 - 42029342
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    |||||||  ||||||||| ||||||||| ||||||| | ||||||||||||| ||||||||    
T  42029402 atttggtaggacccatatgaattttaacaaatcaaatacagtgtgttgaaaaatgtgtgtt 42029342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 6979093 - 6979147
Alignment:
Q  57 taaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||| ||| | | ||||||||||||||||||||| ||||||||||    
T  6979093 taaattttaaccaataaaaaaaa-tgtgttgaaaagtgtgtgttaaaatgtgtgtt 6979147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 16209454 - 16209375
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| ||| |||  ||||||||  || ||| | ||||||||||||| ||||| ||||||||| ||||||||||||    
T  16209454 tttatatgggaccgacaaaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgtgtt 16209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 37810206 - 37810139
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||||| | ||||| | |||| |||||||||||||| ||||||||||||||| || |||| |||||    
T  37810206 atttggtgggtcccatgtgaattataaccaatcaaagagagtgtgttgaaaagtatgagttaaaatgt 37810139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 33069227 - 33069297
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaa 91  Q
    ||||||||| |||||||| |||| ||| ||||||  | | ||||||||||||||| | |||||||||||||    
T  33069227 tttatatgggacccacataatttagtgggacccaagtgatttttaaccaatcaaaaagagtgtgttgaaaa 33069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 23001471 - 23001430
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||    
T  23001471 aattttaaccaatcaaagagagtatgttgaaaaatgtgtgtt 23001430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 29160881 - 29160840
Alignment:
Q  60 attttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||| |||| |||||| ||||||||||||||||||||||    
T  29160881 attttaatcaattaaagatggtgtgttgaaaagtgtgtgtta 29160840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 45300416 - 45300363
Alignment:
Q  51 cccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaa 104  Q
    |||||||  ||||||||||||||||   ||||||||||||| ||||||||||||    
T  45300416 cccatatgtattttaaccaatcaaaaggagtgtgttgaaaaatgtgtgttagaa 45300363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 1930749 - 1930669
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||||| |||||||| ||||| ||  ||  || | ||||||||||||||||| | ||||| ||||||| |||||||||    
T  1930749 tttatatgggacccacataatttgatggaacatatgtgaattttaaccaatcaaaaagagtgtcttgaaaaatgtgtgtta 1930669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 39090445 - 39090369
Alignment:
Q  33 ccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    |||||| ||||||||  || |||||||||||||| |||| ||| | | ||||||||||||| || |||| |||||||    
T  39090445 ccacatgatttggtggaactcatataaattttaagcaataaaatagattgtgttgaaaagtatgggttaaaatgtgt 39090369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 40358729 - 40358801
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| | ||||| |||||||||||| || ||| |||| |||||||||| | ||||||| ||| ||||||    
T  40358729 atttggtgggtcccatgtaaattttaacctataaaaaatagggtgttgaaaattatgtgttaaaatttgtgtt 40358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 41496119 - 41496191
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagt 93  Q
    ||||||| |||||||| | |||| ||||||||||| | |||||||| |||||||| | | |||||| ||||||    
T  41496119 tttatatagaacccacttgatttagtgtgacccatgtgaattttaatcaatcaaaaagaatgtgtttaaaagt 41496191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 1473689 - 1473603
Alignment:
Q  26 atggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||| |||||||| ||||||||  |||||| | ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  1473689 atgggacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgtt 1473603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 4033090 - 4033143
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  4033090 aattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgtgtt 4033143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 5706709 - 5706770
Alignment:
Q  51 cccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||| |||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||    
T  5706709 cccatgtaaattttaatcaatcaaagagagtgtgttgaaaagtatgtgttaaaatgtgtgtt 5706770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 4483445 - 4483356
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||  ||||||| |||||||| ||||| ||| ||||||||||||||||||  || |||||||||||||| ||||| ||||| ||||    
T  4483445 tttatatgggtcccacatgatttggtgggacccgtattaattttaaccaatcaaag--agagtgttgaaaagtgtatgttaaaatgtatgtt 4483356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 6643375 - 6643441
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttg 87  Q
    ||||||||| |||||||| |||||||| |||| |||| |||||||||||||||||||  ||||||||    
T  6643375 tttatatgggacccacatgatttggtgggacctatatgaattttaaccaatcaaagaccgtgtgttg 6643441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 3150288 - 3150209
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||||| |||||| |||||||| ||||||| | ||||||||||||| ||| || || ||||||||| | ||||||    
T  3150288 tttatatggaatccacatgatttggtgggacccatgtgaattttaaccaattaaaaattgtctgttgaaaaatatgtgtt 3150209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 12731614 - 12731705
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||| ||| |||||||| ||||||||  | | || ||||||||||||||||||| | ||||||||| ||| ||||||||| ||| ||||||    
T  12731614 tttatttgggacccacatgatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtgtt 12731705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 24110110 - 24110051
Alignment:
Q  53 catataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||| | ||||||| ||||||    
T  24110110 catatgaattttaaccaatcaaagagagtgtgttgaaaaatgtattttagaatatgtgtt 24110051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 10729942 - 10730013
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttt 113  Q
    |||||||| |||| |||| |||||||||| |||||||| || ||||||||||  |||||||| |||||||||||    
T  10729942 atttggtgcgacctatatgaattttaaccgatcaaagagagcgtgttgaaaa--gtgtgttaaaatgtgtgttt 10730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 12731595 - 12731542
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||| | |||||||| |||||||| ||||||| ||||||    
T  12731595 aattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatgtgtt 12731542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 17389995 - 17390048
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||| || |||||||||| || |||||| ||||||||||    
T  17389995 aattttaaccaatcaaagagagagtgttgaaaattgcgtgttaaaatgtgtgtt 17390048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 31946916 - 31946969
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||| || ||| |  |||||||||||||||||||||||||||||||||    
T  31946916 aattttaaccgataaaaaagtgtgtgttgaaaagtgtgtgttagaatgtgtgtt 31946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 4494435 - 4494386
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtg 110  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||||||    
T  4494435 aattttaaccaatcaaagaaagtgtgttgaaaa--atgtgttagaatgtgtg 4494386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 24783962 - 24784006
Alignment:
Q  57 taaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||    
T  24783962 taaattttaatcaatcaaagatagtgtgttaaaaaatgtgtgtta 24784006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 24783945 - 24783891
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaa 75  Q
    ||||||||||| |||||| |||||||| || |||||| ||||||||| |||||||    
T  24783945 tttatatggaatccacatgatttggtgggatccatatgaattttaacgaatcaaa 24783891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 28865484 - 28865386
Alignment:
Q  26 atggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    |||| |||||||| | |||||| ||||||| | ||||||||||||| ||| | ||| ||||  ||||||| ||||| ||| |||||| |||| ||||||    
T  28865484 atgggacccacatgaattggtgggacccatgtgaattttaaccaataaaaaaaagtatgttagaaagtgtatgttacaatatgtgttgttagcattcct 28865386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 9645015 - 9645064
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtg 108  Q
    ||||||||||||||||| | | ||||||| ||||| ||||||||||||||    
T  9645015 aattttaaccaatcaaaaagattgtgttggaaagtatgtgttagaatgtg 9645064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 9651032 - 9651081
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtg 108  Q
    ||||||||||||||||| | | ||||||| ||||| ||||||||||||||    
T  9651032 aattttaaccaatcaaaaagattgtgttggaaagtatgtgttagaatgtg 9651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 4483445 - 4483517
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||| |  | | |||||||  |||||||| || ||||||||||||| |||||| ||||||||||    
T  4483445 atttggtgtgacctacgtgagttttaacggatcaaagagagcgtgttgaaaagtgcgtgttaaaatgtgtgtt 4483517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 11650968 - 11650916
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatca 73  Q
    ||||||||| |||||||| |||||||| || |||| | |||||||||||||||    
T  11650968 tttatatgggacccacataatttggtgggatccatgtgaattttaaccaatca 11650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 12424933 - 12424886
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    ||||||||||||| ||| | ||||||||||||||||||||||| |||||    
T  12424933 aattttaaccaataaaaaa-agtgtgttgaaaagtgtgtgttaaaatgt 12424886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 17600705 - 17600769
Alignment:
Q  61 ttttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcctt 125  Q
    ||||||||||||||||| | | ||||||||| ||| ||||| |||||||||| |||  |||||||    
T  17600705 ttttaaccaatcaaagagaatatgttgaaaaatgtttgttaaaatgtgtgttgttaacattcctt 17600769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 36059267 - 36059358
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||  |||||||| ||||| || || |||| ||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||    
T  36059267 tttatatgagacccacatgatttgatgggatccatgtaaattttaaccaatcaaataaagtgtgttggaaagtatgtgttagaatgtgtgtt 36059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 42420096 - 42419993
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaat 120  Q
    ||||||||| | |||||| |||||||| ||||||  ||  ||||||||||| ||||| | ||||||||||| |||||||||||||| ||||| |||| ||    
T  42420096 tttatatgggatccacatgatttggtgggacccacgtatgttttaaccaattaaagagaatgtgttgaaaaatgtgtgttagaatgagtgttgttagcat 42419997  T
Q  121 tcct 124  Q
    ||||    
T  42419996 tcct 42419993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 38029607 - 38029530
Alignment:
Q  33 ccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgttt 113  Q
    |||||| |||||||| ||||||| | |||||||||||||||||   ||||||||| ||| |||||||||||||||||||||    
T  38029607 ccacatgatttggtgagacccatgtgaattttaaccaatcaaa---agtgtgttggaaaatgtgtgttagaatgtgtgttt 38029530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 3907714 - 3907644
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| | ||||| | |||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  3907714 atttggtgggtcccatgtgaattttaaccaatcaaaga--gtgtgttgaaaagtgtttgttagaatgtgtgtt 3907644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 35244904 - 35244971
Alignment:
Q  45 gtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| ||| ||||| ||||||||||||| |||||||||| |||||| ||||| ||||||||||    
T  35244904 gtgtgacccctatgaatttcaaccaatcaaagaaagtgtgttgacaagtgtatgttaaaatgtgtgtt 35244971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 17474862 - 17474936
Alignment:
Q  50 acccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    |||||| | |||||||| ||||||||||  |||||||||||||||||||||| ||||| |||| |||| ||||||    
T  17474862 acccatgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtatgttgttagcattcct 17474936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 3907714 - 3907792
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttg--aaaagtgtgt 97  Q
    ||||||||| |||||||| |||||||| ||||||| | ||||||||||||||||| | | |||||||  ||||||||||    
T  3907714 tttatatgggacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttggaaaaagtgtgt 3907792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 4190138 - 4190212
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagata--gtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||| | ||||| | |||||||||| |||||||| |  |||||||||||||||||||||||||||| ||||    
T  4190138 atttggtgggtcccatgtgaattttaacctatcaaagagaccgtgtgttgaaaagtgtgtgttagaatgtatgtt 4190212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 42420117 - 42420168
Alignment:
Q  61 ttttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||| | |||||||||||||| |||| ||||||||||||||    
T  42420117 ttttaaccaatcaaatagagtgtgttgaaaagcgtgttttagaatgtgtgtt 42420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 22399811 - 22399745
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcctt 125  Q
    ||||||| ||||||||| | |||||||||||||||| || ||||||||||||||  ||| |||||||    
T  22399811 aattttatccaatcaaaaagagtgtgttgaaaagtgagtattagaatgtgtgttgctagcattcctt 22399745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 40927687 - 40927757
Alignment:
Q  42 ttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||| | ||||| | |||||| |||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  40927687 ttggtgggtcccatgtgaattttgaccaatcaaagatagtttgttgaaaaatttgtgttataatgtgtgtt 40927757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 32309658 - 32309743
Alignment:
Q  22 ttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||||| || ||||| |||||||| ||   || ||||||||||| ||||||||| | || ||||||||||||||||||| ||||    
T  32309658 ttatatgggactcacatgatttggtgggattaatgtaaattttaacaaatcaaagagaatgcgttgaaaagtgtgtgttaggatgt 32309743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 42249458 - 42249405
Alignment:
Q  52 ccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaat 105  Q
    |||| ||||||||||||||| ||| ||||||||||||||| | |||||||||||    
T  42249458 ccatgtaaattttaaccaattaaaaatagtgtgttgaaaaatatgtgttagaat 42249405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 25545278 - 25545354
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    ||||||||| ||| |||| |||||||| ||| ||  | ||||||||||||||||||| |||||||| ||| ||||||    
T  25545278 tttatatgggaccgacatgatttggtgggactcacgtgaattttaaccaatcaaagagagtgtgttaaaatgtgtgt 25545354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 28907409 - 28907361
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  28907409 aattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 28907361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 28943804 - 28943756
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  28943804 aattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 28943756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 25545259 - 25545211
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    |||||||||||||||||||  |||||||||||| ||||||||| |||||||    
T  25545259 aattttaaccaatcaaaga--gtgtgttgaaaaatgtgtgttaaaatgtgt 25545211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 3416332 - 3416266
Alignment:
Q  31 acccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    |||||||| |||  ||| ||| ||| |||||||||| |||||||||| |||||||||||| ||||||    
T  3416332 acccacatgattctgtgggacacatgtaaattttaatcaatcaaagaaagtgtgttgaaatgtgtgt 3416266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 41169488 - 41169541
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||  |||||||| ||||||||||||| ||||||||| ||| ||||||    
T  41169488 aattttaacggatcaaagagagtgtgttgaaaaatgtgtgttaaaatatgtgtt 41169541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 13122115 - 13122043
Alignment:
Q  24 atatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtg 96  Q
    |||||| |||||| | || ||||| ||| ||| | ||||||| ||||||||||| ||| ||||||||||||||    
T  13122115 atatgggacccacgtaatatggtgggacacatgtgaattttacccaatcaaagagagtatgttgaaaagtgtg 13122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 41106466 - 41106522
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaaga 77  Q
    ||||||||| |||||||| |||||||| |||| || | ||||||||||||| |||||    
T  41106466 tttatatgggacccacataatttggtgcgaccgatgtgaattttaaccaataaaaga 41106522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 34437667 - 34437748
Alignment:
Q  31 acccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||| || |||||| | ||||||| | ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  34437667 acccatataatttggggggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgtt 34437748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 34783438 - 34783493
Alignment:
Q  52 ccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  34783438 ccatatgaattttaaccaatcaaagatagtgtgttgagaagtgtgtgctagaatgt 34783493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 34437676 - 34437598
Alignment:
Q  22 ttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||  ||||||| |||||||| ||||||| | ||||||||||||||||||| ||| ||||||||| ||||||||    
T  34437676 ttatatgggtcccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 31970180 - 31970260
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    ||||||||| |||||||| |||||||| ||||||||| || ||||| |||| ||| | |||||||||||||| ||||||||    
T  31970180 tttatatgggacccacatgatttggtgggacccatatgaaatttaatcaattaaaaagagtgtgttgaaaagcgtgtgtta 31970260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 38663730 - 38663639
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||| | ||||| || |||||||| |||| || | |||| |||||||||||||| ||||||||||||| | ||||||| ||||||||||    
T  38663730 tttatataggacccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtgtt 38663639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 939413 - 939463
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaa 90  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  939413 atttggtgtgtcccatgtaaattttaaccaatcaaagataatgtgttgaaa 939463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 15366543 - 15366489
Alignment:
Q  58 aaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||    
T  15366543 aaattttaaccaatcaaaaagagtgtgttggaaagtgtgtcttagaatgtgtgtt 15366489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 45925168 - 45925238
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaa 91  Q
    ||||||||| |||||||| |||||||| ||| ||||| |||||||| |||||||||| | |||||||||||    
T  45925168 tttatatgggacccacataatttggtgagactcatatgaattttaatcaatcaaagaaaatgtgttgaaaa 45925238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 2542762 - 2542701
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtta 101  Q
    |||||||| | | ||| ||||||||||||||||||||| ||||||||||||| |||||||||    
T  2542762 atttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 2542701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 49822626 - 49822679
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||    
T  49822626 aattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgtt 49822679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 45563162 - 45563214
Alignment:
Q  57 taaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    |||||||||||| |||||||| |||||||||||||||||| | ||||||||||    
T  45563162 taaattttaaccgatcaaagaaagtgtgttgaaaagtgtgcgatagaatgtgt 45563214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 7444360 - 7444269
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    ||||||||| |||||||| |||||||| || |  | | |||||||||| || ||||| | ||||||||||| ||||||||| ||||||||||    
T  7444360 tttatatgggacccacatgatttggtgggaactctttgaattttaaccgattaaagaaaatgtgttgaaaaatgtgtgttaaaatgtgtgtt 7444269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 2542762 - 2542828
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttg 87  Q
    |||||||||||||||||| ||||||||  | |||| | ||||||||||||||||||| | |||||||    
T  2542762 tttatatggaacccacatgatttggtggaagccatgtgaattttaaccaatcaaagagaatgtgttg 2542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 40669027 - 40669065
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  40669027 aattttaaccaatcaaagagagtgtgttgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 7444379 - 7444432
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtt 112  Q
    |||||||||  |||||||| | ||||||||||||||| ||||||||||||||||    
T  7444379 aattttaactcatcaaagagaatgtgttgaaaagtgtttgttagaatgtgtgtt 7444432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 31970161 - 31970116
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaa 104  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||    
T  31970161 aattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttagaa 31970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 38948183 - 38948236
Alignment:
Q  52 ccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaat 105  Q
    |||||| |||| |||| ||||||||| |||||||| ||||||||||||||||||    
T  38948183 ccatatgaattctaacaaatcaaagagagtgtgttaaaaagtgtgtgttagaat 38948236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16661856 - 16661808
Alignment:
Q  59 aattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgt 107  Q
    |||||||||| |||||||| | ||||||||||| |||||||||||||||    
T  16661856 aattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaatgt 16661808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 40669008 - 40668932
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgt 97  Q
    |||||||||  ||||||| |||| ||| ||||||| | | ||||||||||||||||| |||||||| ||| ||||||    
T  40669008 tttatatgggtcccacataattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgttaaaatgtgtgt 40668932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 731390 - 731468
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgtt 100  Q
    ||||||||| |||||||| |||||||| ||| ||| ||||||||||||||| ||| | | | ||||||||| ||||||||    
T  731390 tttatatgggacccacatgatttggtgcgactcatgtaaattttaaccaataaaaaagactttgttgaaaa-tgtgtgtt 731468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 16257603 - 16257672
Alignment:
Q  40 atttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    |||||||| ||| ||| | |||||||||  |||||| ||| ||||||||||| ||||||||| |||||||    
T  16257603 atttggtgggacacatgtcaattttaacatatcaaaaataatgtgttgaaaaatgtgtgttaaaatgtgt 16257672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 49403551 - 49403467
Alignment:
Q  21 tttatatggaacccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaat 105  Q
    |||||||||||||||||| ||||| || |||  || | ||||||||||||||| | | | | |||| |||| |||||||||||||    
T  49403551 tttatatggaacccacataatttgatgggacttatgtgaattttaaccaatcataaaaaatatgttaaaaaatgtgtgttagaat 49403467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 201059 - 201120
Alignment:
Q  63 ttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    ||||| ||||||||| |||||||||| |||||||||||| ||||||| || |||| ||||||    
T  201059 ttaacaaatcaaagagagtgtgttgataagtgtgtgttaaaatgtgtattgttagcattcct 201120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 136421 - 136469
Alignment:
Q  61 ttttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgt 109  Q
    ||||||||||||||| | ||||||||||||| ||||||||| |||||||    
T  136421 ttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgt 136469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 8251 - 8342
Alignment:
Q  32 cccacatcatttggtgtgacccatataaattttaaccaatcaaagatagtgtgttgaaaagtgtgtgttagaatgtgtgtttttagaattcct 124  Q
    ||||||| |||||||| ||  ||| | ||||||| ||||||||| | | || |||||||||||||||||| ||||| |||| |||| ||||||    
T  8251 cccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgtta-aatgtatgttgttagcattcct 8342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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