View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21360_high_3 (Length: 278)
Name: NF21360_high_3
Description: NF21360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21360_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 7961155 - 7960897
Alignment:
| Q |
1 |
ggatttaaggttgatgggcagtgttattttacgttggtttattttctgtgtgagggtgatgagtttgagtgggctttggatattgctaaggagtgtattg |
100 |
Q |
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| T |
7961155 |
ggatttaaggttgatgggcagtgttattttacgttggtttattttctgtgtgagggtgatgagtttgagtgggctttggatattgctaaggagtgtattg |
7961056 |
T |
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| Q |
101 |
ctaaaggttgggttccaaattttactactatgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaat |
200 |
Q |
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| T |
7961055 |
ctaaaggttgggttccgaattttactactatgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaat |
7960956 |
T |
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| Q |
201 |
caaggagaagtttgctgaaaagagtgacaggtgggatgaaattgaagcggggttatcgc |
259 |
Q |
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| T |
7960955 |
caaggagaagtttgctgaaaagagtgacaggtgggatgaaattgaagcggggttatcgc |
7960897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 247
Target Start/End: Original strand, 17302014 - 17302139
Alignment:
| Q |
122 |
ttactactatgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaatcaaggagaagtttgctgaaaa |
221 |
Q |
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| T |
17302014 |
ttactacaatgaaaaaacttgtgaatgggcttgtttgtgtttcgaaggttgatgatgctaaaaagcttgttgagaaaatcaaggacaagttttctgaaaa |
17302113 |
T |
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| Q |
222 |
gagtgacaggtgggatgaaattgaag |
247 |
Q |
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| T |
17302114 |
cggggacaagtggggtgaacttgaag |
17302139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 10803409 - 10803305
Alignment:
| Q |
103 |
aaaggttgggttccaaattttactactatgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaatca |
202 |
Q |
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|||||||||||| ||| ||||||| ||||||||| ||||||||||| | |||||||||| ||||||||||||||||| || |||||| ||||||||| |
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| T |
10803409 |
aaaggttgggttttgaatattactacgatgaagaaggttgtgaatggaagttttggtgtttcgaaggttgatgatgctaacgaacttattgaggaaatca |
10803310 |
T |
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| Q |
203 |
aggag |
207 |
Q |
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| T |
10803309 |
aggag |
10803305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 43114134 - 43114048
Alignment:
| Q |
122 |
ttactactatgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaatcaaggaga |
208 |
Q |
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| T |
43114134 |
ttactacgaagaagaaggttgtgaatggaagttttggtgtttggaaggttggtgatgctaacgagcttattgaggaaatcaaggaga |
43114048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 55210236 - 55210159
Alignment:
| Q |
130 |
atgaagaagcttgtgaatggacttgttggtgtttcaaaggttgatgatgctaaagagcttattaaggaaatcaaggag |
207 |
Q |
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| T |
55210236 |
atgaagaaggttgtgaatggaagttttggtgttttgaaggttgatgatgctgacgagcttattgaggaaatcaaggag |
55210159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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