View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21360_low_1 (Length: 561)

Name: NF21360_low_1
Description: NF21360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21360_low_1
NF21360_low_1
[»] chr6 (33 HSPs)
chr6 (8-545)||(4556683-4557221)
chr6 (250-543)||(4585171-4585462)
chr6 (9-118)||(4570958-4571067)
chr6 (13-112)||(4585628-4585727)
chr6 (22-118)||(4606941-4607037)
chr6 (180-321)||(4607154-4607293)
chr6 (21-115)||(4560495-4560589)
chr6 (13-104)||(4480693-4480784)
chr6 (8-118)||(4579418-4579528)
chr6 (8-107)||(4574305-4574404)
chr6 (344-545)||(4570556-4570756)
chr6 (13-109)||(4598166-4598262)
chr6 (8-107)||(4563708-4563807)
chr6 (13-98)||(4504438-4504523)
chr6 (13-101)||(3171744-3171832)
chr6 (13-104)||(4516321-4516412)
chr6 (13-108)||(4592227-4592322)
chr6 (8-109)||(4613754-4613855)
chr6 (20-104)||(4492955-4493039)
chr6 (28-104)||(4505857-4505933)
chr6 (13-104)||(4617022-4617113)
chr6 (161-276)||(4570769-4570880)
chr6 (13-101)||(4267207-4267295)
chr6 (13-100)||(4392067-4392154)
chr6 (13-98)||(4490396-4490481)
chr6 (14-85)||(4568072-4568143)
chr6 (20-101)||(4299788-4299869)
chr6 (15-104)||(4461123-4461212)
chr6 (20-104)||(4515169-4515253)
chr6 (178-218)||(4585465-4585505)
chr6 (45-104)||(4601789-4601848)
chr6 (42-101)||(4622145-4622204)
chr6 (13-101)||(4625954-4626042)
[»] chr8 (3 HSPs)
chr8 (20-118)||(16686315-16686413)
chr8 (8-118)||(20863879-20863989)
chr8 (13-104)||(1674226-1674317)
[»] chr5 (2 HSPs)
chr5 (21-104)||(28000148-28000231)
chr5 (15-101)||(24103002-24103088)
[»] scaffold0288 (1 HSPs)
scaffold0288 (15-101)||(3762-3848)
[»] chr3 (1 HSPs)
chr3 (23-104)||(1281114-1281195)
[»] scaffold0477 (1 HSPs)
scaffold0477 (13-101)||(4727-4815)
[»] chr7 (1 HSPs)
chr7 (45-98)||(3086426-3086479)


Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Complemental strand, 4557221 - 4556683
Alignment:
Q  8 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4557221 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 4557122  T
Q  108 acctaagtgacnnnnnnn-atgcaatttagta----attgaatttaagggatgatgctaataagtaatcagtttctgatgatggaattgaacatatcttg 202  Q
    |||||||||||        |||||||||||||    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4557121 acctaagtgacttttttttatgcaatttagtattacattgaatttaagagatgatgctaataagtaatcagtttatgatgatggaattgaacatatcttg 4557022  T
Q  203 tgcaagaattcttaaaataaaatagtggttattgcatgctaatattaaatggattgaattagataattatatggcatgtatttgaatctttattagttga 302  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  4557021 tgcaagaattcttaaaataaaatagtggttattgc----taatattaaatggattgaattagatagttatatggcatgtatttaaatctttattagttga 4556926  T
Q  303 atcttatagctttgaataattgcagttgggtgagttaggttttttccacagtatcttgaattccattctgatgtgaaggataaattaaggcataacaatc 402  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  4556925 attttatagctttgaataattgcagttgggtgagttaggttttttccacagtatcttgaattccattctcatgtgaaggataaattaaggcaaaacaatc 4556826  T
Q  403 attttgctttgtgtacaggtttaaactaacatccttctctattctacaaggtttatagttttgttaggaataactaactaattaaatacaaatcataagt 502  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4556825 attttgccgtgtgtacaggtttaaactaacatccttctctattctacaagatttatagttttgttaggaataactaactaattaaatacaaatcataagt 4556726  T
Q  503 aaatgttttactctagaatggaaaacagttttaatgtaaaata 545  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  4556725 aaatgttttactctagcatggaaaacagttttaatgtaaaata 4556683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 250 - 543
Target Start/End: Complemental strand, 4585462 - 4585171
Alignment:
Q  250 aatggattgaattagataattatatggcat--gtatttgaatctttattagttgaatcttatagctttgaataattgcagttgggtgagttaggtttttt 347  Q
    ||||||||||||| ||||||| ||||||||  |||||| ||| |||||| ||||||| ||| |||||||||   ||| |||||||  ||| ||| |||||    
T  4585462 aatggattgaattggataattctatggcatatgtatttaaatttttattcgttgaattttacagctttgaaattttgaagttggggtagtgaggcttttt 4585363  T
Q  348 ccacagtatcttgaattccattctgatgtgaaggataaattaaggcataacaatcattttgctttgtgtacaggtttaaactaacatccttctctattct 447  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||| |||||||| |||||| ||||| |||||||||| ||| |||||||| | ||      
T  4585362 ccacagtatcttgaattccattatcatatgaaggataaattaaagca-aacaatcactttgctgtgtgttcaggtttaaattaatatccttctatgttaa 4585264  T
Q  448 acaaggtttatagttttgttaggaataactaactaattaaatacaaatcataagtaaatgttttactctagaatggaaaacagttttaatgtaaaa 543  Q
    ||||| |||||||||||||||||||||||||   ||||||||||||  ||||||| ||||||||||| ||  || | || |||||||||| |||||    
T  4585263 acaagatttatagttttgttaggaataacta---aattaaatacaagccataagttaatgttttactttaacattggaatcagttttaatataaaa 4585171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 4571067 - 4570958
Alignment:
Q  9 gagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaa 108  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  4571067 gagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaca 4570968  T
Q  109 cctaagtgac 118  Q
    ||||||||||    
T  4570967 cctaagtgac 4570958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 4585727 - 4585628
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaaccta 112  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4585727 tgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaaccta 4585628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 4606941 - 4607037
Alignment:
Q  22 aggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgac 118  Q
    ||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4606941 aggcggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgac 4607037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 180 - 321
Target Start/End: Original strand, 4607154 - 4607293
Alignment:
Q  180 atgatggaattgaacatatcttgtgcaagaattcttaaaataaaatagtggttattgcatgctaatattaaatggattgaattagataat--tatatggc 277  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||    | |||||||||||||||||||||||| || |||  ||||||||    
T  4607154 atgatagaagtgaacatatcttgtgcaagaattcttaaactaaaatagtggtt----cttgctaatattaaatggattgaattcgacaattatatatggc 4607249  T
Q  278 atgtatttgaatctttattagttgaatcttatagctttgaataa 321  Q
    |||||||| ||| |||||||||||||| ||| ||||||||||||    
T  4607250 atgtatttaaatatttattagttgaattttacagctttgaataa 4607293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 4560589 - 4560495
Alignment:
Q  21 aaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagt 115  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||    
T  4560589 aaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagt 4560495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 4480784 - 4480693
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  4480784 tgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat 4480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 4579528 - 4579418
Alignment:
Q  8 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 107  Q
    |||| |||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| || || |||||||||| |    
T  4579528 tgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcga 4579429  T
Q  108 acctaagtgac 118  Q
    || ||||||||    
T  4579428 acttaagtgac 4579418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 4574404 - 4574305
Alignment:
Q  8 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 107  Q
    |||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||    
T  4574404 tgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaa 4574305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 344 - 545
Target Start/End: Complemental strand, 4570756 - 4570556
Alignment:
Q  344 ttttccacagtatcttgaattccattctgatgtgaaggataaattaaggcataacaatcattttgctttgtgtacaggtttaaactaacatccttctcta 443  Q
    |||| |||| ||| |||||||||||| | ||||  |||||||||||||||| | |||||||||| || |||||||||||||||| ||| ||| |||| |     
T  4570756 ttttgcacactatgttgaattccattatcatgtataggataaattaaggcaaaccaatcatttttctgtgtgtacaggtttaaattaatatcgttctatc 4570657  T
Q  444 -ttcta--caaggtttatagttttgttaggaataactaactaattaaatacaaatcataagtaaatgttttactctagaatggaaaacagttttaatgta 540  Q
     |||||  |||| ||||||||||| | |||| |||||||    |||||||||| |||||||||||| |||||||||| ||| |||| |||||||||  ||    
T  4570656 gttctatacaagatttatagttttatcaggattaactaa----ttaaatacaagtcataagtaaatattttactctaaaatagaaatcagttttaaaata 4570561  T
Q  541 aaata 545  Q
    |||||    
T  4570560 aaata 4570556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 4598262 - 4598166
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaac 109  Q
    |||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||| || ||||||||||||||||| || |||||||| ||||||||    
T  4598262 tgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaacagaatcaaac 4598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 4563807 - 4563708
Alignment:
Q  8 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 107  Q
    |||| |||||| ||| | ||||||  |||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  4563807 tgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatcaa 4563708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 4504438 - 4504523
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 98  Q
    |||||| |||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| || |||||||||    
T  4504438 tgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 3171832 - 3171744
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||| |||||||| || |||  ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3171832 tgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaa 3171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 4516412 - 4516321
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||| |||||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||||  |||| |||||||||    
T  4516412 tgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaat 4516321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 4592322 - 4592227
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaa 108  Q
    |||||| |||||| |||||| ||||||||||||| ||||||||||| ||||||||||| ||| |||| |||||||| ||||||||| |||||||||    
T  4592322 tgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa 4592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 4613754 - 4613855
Alignment:
Q  8 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 107  Q
    |||| |||||| |||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||| || |||||  |||| ||||||||||||    
T  4613754 tgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaa 4613853  T
Q  108 ac 109  Q
    ||    
T  4613854 ac 4613855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 4493039 - 4492955
Alignment:
Q  20 gaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||    
T  4493039 gaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 4505933 - 4505857
Alignment:
Q  28 aggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    ||||||| || ||||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||    
T  4505933 aggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 4617113 - 4617022
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||| |||||| |||||| |||| ||||| |||||||||||||||||||||||| | ||||| |||||||| || |||||||||||||||    
T  4617113 tgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 4570880 - 4570769
Alignment:
Q  161 aataagtaatcagtttctgatgatggaattgaacatatcttgtgcaagaattcttaaaataaaatagtggttattgcatgctaatattaaatggattgaa 260  Q
    |||||||||| ||||  ||||||  | || |||||||||||||||||||||||||||| |||||||||| ||    | ||||||||||||||| ||||||    
T  4570880 aataagtaatgagttcatgatgactgtatcgaacatatcttgtgcaagaattcttaaactaaaatagtgctt----cttgctaatattaaatgtattgaa 4570785  T
Q  261 ttagataattatatgg 276  Q
    || |||||||||||||    
T  4570784 ttggataattatatgg 4570769  T

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Target: chr6; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 4267207 - 4267295
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||| || ||| |||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||  |||||||||||    
T  4267207 tgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

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Target: chr6; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 4392067 - 4392154
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaaca 100  Q
    |||||| ||||||  ||||||||||  |||||||||||| ||||| |||||||||||| ||| ||||||||||||| |||||||||||    
T  4392067 tgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca 4392154  T

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Target: chr6; HSP #25
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 4490396 - 4490481
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 98  Q
    |||||| |||||| | ||||||||||||||  |||||| ||||||||||||||||||| |||||||||||||| ||  ||||||||    
T  4490396 tgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

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Target: chr6; HSP #26
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 4568143 - 4568072
Alignment:
Q  14 gaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaagga 85  Q
    ||||| |||||| ||| ||||||| |||||||||| || |||||||||||||||||| ||||||||||||||    
T  4568143 gaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

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Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 4299788 - 4299869
Alignment:
Q  20 gaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||| |||| |  || ||||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||    
T  4299788 gaaggcagaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaa 4299869  T

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Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 4461212 - 4461123
Alignment:
Q  15 aagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||| ||||| ||||||||| || |||||||| |||  |||||||| ||||||||| ||||| |||||||| || |||||||||||||||    
T  4461212 aagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaat 4461123  T

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Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 4515169 - 4515253
Alignment:
Q  20 gaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||| || |||||||| |||| ||| || | ||||||| |||||||||| |||||||| |||||||| |||||||||||||||    
T  4515169 gaaggcagacgaggacactagacttggcgggtcttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

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Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 4585505 - 4585465
Alignment:
Q  178 tgatgatggaattgaacatatcttgtgcaagaattcttaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4585505 tgatgatggaattgaacatatcttgtgcaagaattcttaaa 4585465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 4601848 - 4601789
Alignment:
Q  45 ggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||||||||||||| |||| |||| ||||| ||||||||||| |||||||||||||||    
T  4601848 ggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 4622204 - 4622145
Alignment:
Q  42 cctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||||||||||||||||||  |||||||| ||||| |||||||||||  |||||||||||    
T  4622204 cctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa 4622145  T

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Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 4626042 - 4625954
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||| |||||| |||  || || ||||||||||||||||||||  |||| ||| ||||||| || || ||||||||||||    
T  4626042 tgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgcttaaacaa 4625954  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 16686315 - 16686413
Alignment:
Q  20 gaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgac 118  Q
    ||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16686315 gaaggtggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 16686413  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 20863879 - 20863989
Alignment:
Q  8 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 107  Q
    |||| |||||| |||||| ||||||||||| ||||| |  ||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  20863879 tgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaa 20863978  T
Q  108 acctaagtgac 118  Q
    || ||||||||    
T  20863979 acttaagtgac 20863989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 1674317 - 1674226
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||| |||||| |||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  1674317 tgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 28000148 - 28000231
Alignment:
Q  21 aaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    ||||| |||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||| || ||| |||||||||||    
T  28000148 aaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat 28000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 24103088 - 24103002
Alignment:
Q  15 aagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||| |||||| || ||| |||| ||| ||||||||| |||||||||||||||||| ||||| |||||||||||  |||||||||||    
T  24103088 aagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

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Target: scaffold0288 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 3762 - 3848
Alignment:
Q  15 aagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||| |||||| |||||| |||| ||||| |||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  3762 aagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 3848  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 1281195 - 1281114
Alignment:
Q  23 ggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaaaat 104  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||||||  | |||||||||||||||    
T  1281195 ggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat 1281114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 4727 - 4815
Alignment:
Q  13 tgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaacaa 101  Q
    |||||| |||||| |||||| |||| ||  ||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  4727 tgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
Q  45 ggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaa 98  Q
    |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  3086479 ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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