View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21360_low_2 (Length: 283)
Name: NF21360_low_2
Description: NF21360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21360_low_2 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 2631 - 2460
Alignment:
| Q |
93 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagctggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
192 |
Q |
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| T |
2631 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcc |
2532 |
T |
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| Q |
193 |
cccaaccacaccaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcag |
264 |
Q |
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| T |
2531 |
cccaagcacaccaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcag |
2460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 9233 - 9062
Alignment:
| Q |
93 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagctggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
192 |
Q |
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| T |
9233 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctatgcataacaccgcaccaaacccagcc |
9134 |
T |
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| Q |
193 |
cccaaccacaccaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcag |
264 |
Q |
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| T |
9133 |
cccaagcacaccaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcag |
9062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 17060655 - 17060485
Alignment:
| Q |
93 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagctggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
192 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17060655 |
gtgactgatgcaaaggtatacaaagacccaaaa-ctatccggaaaggcagccagacaagaacaatgaccccctatgcataacaccgcaccaaaccaagcc |
17060557 |
T |
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| Q |
193 |
cccaaccacaccaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcag |
264 |
Q |
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| T |
17060556 |
cccaaccacaccaacacgtgctgaaccgcaccacagaagctgctggcagcagcaaacaccagctgacagcag |
17060485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 93 - 237
Target Start/End: Complemental strand, 48224123 - 48223979
Alignment:
| Q |
93 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagctggacaagaacaatgaccccctatgcataacaccacaccaaaccaagcc |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||||||||| |||| |
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| T |
48224123 |
gtgactgatgcaaaggtatacaaagacccaaaaactatccggaaaggcagccggacaagaacaatgaccccctacgcataacgccgcaccaaacccagcc |
48224024 |
T |
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| Q |
193 |
cccaaccacaccaacacgtgctgaaccgcaccacagaagctgctg |
237 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48224023 |
cccaagcacaccaacacgtgctgaaccgcaccacagaagctgctg |
48223979 |
T |
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