View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_high_3 (Length: 439)
Name: NF21361_high_3
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 220147 - 219733
Alignment:
| Q |
18 |
atcacttcactccctaactcattcactatcataattgacgatttggaacatcgtcaatttttataattctacaaccataattgagattatataaaccacg |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
220147 |
atcacttcactctctaactcattcactatcataattgacgatttggaacatcgtcaatttttataattctacaaccataattgagattatataaaccacg |
220048 |
T |
|
| Q |
118 |
attaattgcaattctttgcgaatgcgactatatccgcgattgtgattaattgtgtttataatttgttacctcgagaaatttggctccagcttcaagctcc |
217 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
220047 |
attaattgcaattcttcgcgaatgcgactatatctgcgattgtgattaattgtgtttataatttgttacctcgagaaatttggctccagcttcaagctcc |
219948 |
T |
|
| Q |
218 |
cgctctttggaagaacagttcccacggccggtagtgtataggttttttgcaactgaaaaggtacgcattataatcctccttttgttcttgatttccttgt |
317 |
Q |
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| ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
219947 |
cactctttggaagaacatttcccacgaccggtagtgtatagtttttttgcaactgaaaagctacgcattataatcctccttttgttcttgatttccttgt |
219848 |
T |
|
| Q |
318 |
ttagtttcataggttttggcattgatgttaaagtattcaaccttttctgataagcaatcactgccttcacaaactcctacacatttaatattccttaaaa |
417 |
Q |
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||||||||||| ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
219847 |
ttagtttcatacgttttggcactgatgttaaagtattcagccttttctgaaaagcaatcactgccttcacaaactcctacacatttaatattcctcaaaa |
219748 |
T |
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| Q |
418 |
tcaaatttcatctca |
432 |
Q |
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||||||||||||||| |
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| T |
219747 |
tcaaatttcatctca |
219733 |
T |
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