View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_high_4 (Length: 395)
Name: NF21361_high_4
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 384
Target Start/End: Original strand, 30791555 - 30791921
Alignment:
| Q |
4 |
gtaatcaaaatttcaacggatcaatatatctagtggaccagcgtaaatgcacaatgtgagctttcttttgattcaaataggagtgaaaatgaaaggtgaa |
103 |
Q |
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| T |
30791555 |
gtaatcaaaatttcaacgtatcaatatatctattggaccagcgtaaatgcacaatgtgagctttcttttgattcaaataggagtgaaaatgaaaggtgaa |
30791654 |
T |
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| Q |
104 |
actagaatgaacagaattaatttaacatgacattgtttctagacacatacgtgcatatgatatatagatatatttgaatagaatttcctattgcttttta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791655 |
actagaatgaacagaattaatttaacatgacattgtttctagacacatacgtgcatatgatatatagatatatttgaatagaatttcctattgcttttta |
30791754 |
T |
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| Q |
204 |
tggtcccttctctgttttcttttttattccttacnnnnnnnntggagaattctcttaaaccaagaaaaactcattcctagtagaacggcgccacacgaaa |
303 |
Q |
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|||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791755 |
tggtcccttctctgtttt------------ttacaaaaaaaatggagaat--tcttaaaccaagaaaaactcattcctagtagaacggcgccacacgaaa |
30791840 |
T |
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| Q |
304 |
caaagaagaataaaatataactttgtttctgtcctgtgaagtggtgagtcgtgcttgtgcaaaacagccaaccaatttcat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30791841 |
caaagaagaataaaatataactttgtttctgtcctgtgaagtggtgaatcgtgcttgtgcaaaacagccaaccaatttcat |
30791921 |
T |
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