View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_high_6 (Length: 350)
Name: NF21361_high_6
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 178 - 315
Target Start/End: Original strand, 9871591 - 9871728
Alignment:
| Q |
178 |
tcctattaatgtggtttctgcctctaaatccaccacaagagctcaatgaatgatgagatttggtgagctactttttcattccaacatacctattttttct |
277 |
Q |
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| T |
9871591 |
tcctattaatgtggtttctgcctctaaatccaccacaagagctcaatgaatgatgagatttggtgagctactttttcattccaacatacctattttttct |
9871690 |
T |
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| Q |
278 |
aacaaattctttctttttattatcttctccctcatata |
315 |
Q |
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| T |
9871691 |
aacaaattctttctttttattatcttctccctcatata |
9871728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 9871430 - 9871544
Alignment:
| Q |
19 |
acattgagtgacgaagataactatatcacataacactaacacccctccacacnnnnnnnnnntaaaa--cagatctcactcttccccataacttatttat |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
9871430 |
acattaagtgacgaagataactatatcacataacactaacacccctccacacaaaaaaaaaaaaaaaaacagatctcactcttccccataacttatttat |
9871529 |
T |
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| Q |
117 |
ttttgctaagtaaag |
131 |
Q |
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| T |
9871530 |
ttttgctaagtaaag |
9871544 |
T |
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