View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_high_7 (Length: 326)
Name: NF21361_high_7
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_high_7 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 794 - 538
Alignment:
| Q |
1 |
agtgatgaggttggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
794 |
agtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
695 |
T |
|
| Q |
101 |
ctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
694 |
ctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
595 |
T |
|
| Q |
201 |
ctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
260 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
594 |
ctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 8447 - 8191
Alignment:
| Q |
1 |
agtgatgaggttggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8447 |
agtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
8348 |
T |
|
| Q |
101 |
ctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8347 |
ctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
8248 |
T |
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| Q |
201 |
ctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
260 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8247 |
ctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
8191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 554 - 500
Alignment:
| Q |
271 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
325 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 8207 - 8153
Alignment:
| Q |
271 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
325 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
8153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6506769 - 6506513
Alignment:
| Q |
1 |
agtgatgaggttggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506769 |
agtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
6506670 |
T |
|
| Q |
101 |
ctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506669 |
ctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
6506570 |
T |
|
| Q |
201 |
ctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
260 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6506569 |
ctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
6506513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 6512676 - 6512451
Alignment:
| Q |
1 |
agtgatgaggttggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||| |||| |
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| T |
6512676 |
agtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaat |
6512577 |
T |
|
| Q |
101 |
ctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
200 |
Q |
| |
|
||||||||| |||||||| |||||| |||| || || |||| |||| || ||||||| |||||||||||||||||||||||| ||||||| || |
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| T |
6512576 |
ctatcaaagcaatcccaagatgttgtaacaacaggttg------ggtgctagaattgttagaccaagttgttatttgagatatgaaaccgattcactctt |
6512483 |
T |
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| Q |
201 |
ctatcaacaaacacaagattcaccttcatcat |
232 |
Q |
| |
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|||||||||||||| |||| |||| ||||||| |
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| T |
6512482 |
ctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 6521960 - 6522161
Alignment:
| Q |
1 |
agtgatgaggttggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||| ||||||| | ||| |
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| T |
6521960 |
agtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaat |
6522059 |
T |
|
| Q |
101 |
ctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
200 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||| |||||| |||| || |||||||||||||| ||||||||||||||||||||||| | || |
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| T |
6522060 |
ctatcaaagaaatttcaaattgttgtaacaata-----ggt-taggtgctagaattgttagacccagttgtaatttgagatatgaaaccaattcattctt |
6522153 |
T |
|
| Q |
201 |
ctatcaac |
208 |
Q |
| |
|
|||||||| |
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|
| T |
6522154 |
ctatcaac |
6522161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6517075 - 6516855
Alignment:
| Q |
1 |
agtgatgaggttggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |||||||| ||||||| | ||| |
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|
| T |
6517075 |
agtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaat |
6516976 |
T |
|
| Q |
101 |
ctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcactttt |
200 |
Q |
| |
|
||||||| |||||| ||| |||||| |||| || ||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||| || |
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| T |
6516975 |
ctatcaatgaaatcgcaatatgttgtaacaacaggatg------agtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactctt |
6516882 |
T |
|
| Q |
201 |
ctatcaacaaacacaagattcaccttc |
227 |
Q |
| |
|
||||||| |||||||||||||||||| |
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|
| T |
6516881 |
ttatcaaccaacacaagattcaccttc |
6516855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 6506529 - 6506475
Alignment:
| Q |
271 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
325 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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|
| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
6506475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
27 |
tcaaaccatatttgctcttgttcaatgcacacctgatttgtc |
68 |
Q |
| |
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||||||||||| || ||||||||| ||||||||||||||||| |
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| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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