View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_low_1 (Length: 517)
Name: NF21361_low_1
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Complemental strand, 43396639 - 43396160
Alignment:
| Q |
20 |
tcattctctttctgtctataacccaatagccatgcatgacaaatagcagccaccatcgatgccgtacctgcaccacatacaaataaattccacactttcc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43396639 |
tcattctctttctgtctataacccaatagccatgcatggcaaatagcagccaccatcgacgccgtacctgcaccacatacaaataaattccacactttcc |
43396540 |
T |
|
| Q |
120 |
aacactcccaaaatcaaatcaacaaaacaaattcagtccatgcttggtctcacgtgagtttatcaaaatcacagcgagctaccgtagcttttgaaaatta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43396539 |
aacactcccaaaatcaaatcaacaaaacaaattcagtccatgtttggtctcacgtgagtttatcaaaatcacagtgagctaccgtagcttttgaaaatta |
43396440 |
T |
|
| Q |
220 |
taatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcacaattttgatttc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396439 |
taatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcacaattttgatttc |
43396340 |
T |
|
| Q |
320 |
gacatttgtatgaagctctcccttcgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgtagtttcttcttct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396339 |
gacatttgtatgaagctctcccttcgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgtagtttcttcttct |
43396240 |
T |
|
| Q |
420 |
tccttcacaaaattcttcaccggagctatcttctcccacgaacacgtggaagaagatatcgttctccggtgagcagattc |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396239 |
tccttcacaaaattcttcaccggagctatcttctcccacgaacacgtggaagaagatatcgttctccggtgagcagattc |
43396160 |
T |
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