View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_low_12 (Length: 272)
Name: NF21361_low_12
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 30791260 - 30791493
Alignment:
| Q |
18 |
catggctgacatgaatgtgcctcctcataggccttccaatgaccatggaccaattgattagttaaattaagaaataatttgtaattaattgagaaatgga |
117 |
Q |
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| T |
30791260 |
catggctgacatgaatgtgcctcctcataggccttccaatgaccatggaccaattgattagttaaattaagaaataatttgtaattaattgagaaatgga |
30791359 |
T |
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| Q |
118 |
aacaaatataaatgtagattttaacatccatagtaaatagtaactcatgttattgcttccaatatgaacagatcatgtattttctcaaagtaaaatctgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791360 |
aacaaatataaatgtagattttaacatccatagtaaatagtaactcatgttattgcttccaatatgaacagatcatgtattttctcaaagtaaaatctgt |
30791459 |
T |
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| Q |
218 |
cttttgtatgac-tatgttgaagacatattatgc |
250 |
Q |
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|||||||||||| ||||||||||| ||||||||| |
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| T |
30791460 |
cttttgtatgacttatgttgaagatatattatgc |
30791493 |
T |
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