View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_low_15 (Length: 231)
Name: NF21361_low_15
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_low_15 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 33675108 - 33674920
Alignment:
| Q |
1 |
tacatgggaaaagttgaactgttaagttagtgttgttatcttttgaattgnnnnnnn-acaggtagtgttgttatctttttagaaacgattaattataaa |
99 |
Q |
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| T |
33675108 |
tacattggaaaagttgaacttttaagttagtgttgttatcttttgaattgttttttgtactggtagtgttgttatctttttagaaacgattaattataat |
33675009 |
T |
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| Q |
100 |
tttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcacaa |
188 |
Q |
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| T |
33675008 |
tttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcacaa |
33674920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 33664495 - 33664308
Alignment:
| Q |
1 |
tacatgggaaaagttgaactgttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaacgattaattataaat |
100 |
Q |
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| T |
33664495 |
tacattggaaaagttgaacttttaagttagtgttgttatcttttgtttctttttttgacaggtagtgttgttatctttttagaaacgattaattataaat |
33664396 |
T |
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| Q |
101 |
ttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcacaa |
188 |
Q |
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| T |
33664395 |
ttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcacaa |
33664308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 33686239 - 33686110
Alignment:
| Q |
59 |
caggtagtgttgttatctttttagaaacgattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttata |
158 |
Q |
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| T |
33686239 |
caggtagtgttgttatctttttagaaacgattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttata |
33686140 |
T |
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| Q |
159 |
taccacctaactccaactctcctatcacaa |
188 |
Q |
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| T |
33686139 |
taccacctaactccaactctcctatcacaa |
33686110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 33693413 - 33693298
Alignment:
| Q |
60 |
aggtagtgttgttatctttttagaaacgattaattataaatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatat |
159 |
Q |
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| T |
33693413 |
aggtagtgtggttatctttttagaaacacttaattttaaatttattataatcta-ttcctta-----taattatattt-------ggaacccctttatat |
33693327 |
T |
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| Q |
160 |
accacctaactccaactctcctatcacaa |
188 |
Q |
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| T |
33693326 |
accaccaaactctaactctcatatcacaa |
33693298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 102936 - 103123
Alignment:
| Q |
1 |
tacatgggaaaagttgaactgttaagttagtgttgttatcttttgaattgnnnnnnnacaggtagtgttgttatctttttagaaacgattaattat---a |
97 |
Q |
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||||| |||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||| |||||||| | |
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| T |
102936 |
tacattggaaaagttgaaactttaagttagtgttgttatattttg--tttttttttgacaggtagtgttgttatctttttagagacgcttaattattata |
103033 |
T |
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| Q |
98 |
aatttatcataatctaatttcttagtggataattataatttgtaattggaacccctttatataccacctaactccaactctcctatcacaa |
188 |
Q |
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| T |
103034 |
aatttataataatcta-tttcttaatgaatagttataatttgtaattggaacccctttatataccacctaaccccaactctcctatcacaa |
103123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 86367 - 86432
Alignment:
| Q |
72 |
tatctttttagaaacgattaattataaatttatcataatctaatttcttagtggataattataatt |
137 |
Q |
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|||||||||||||| | |||||||||||||||| |||||||||| |||| ||||| ||||||||| |
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| T |
86367 |
tatctttttagaaaagcttaattataaatttatactaatctaattacttaatggatgattataatt |
86432 |
T |
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