View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21361_low_2 (Length: 464)

Name: NF21361_low_2
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21361_low_2
NF21361_low_2
[»] chr3 (3 HSPs)
chr3 (248-331)||(39484214-39484297)
chr3 (13-93)||(39484452-39484532)
chr3 (381-448)||(39484097-39484164)
[»] chr2 (1 HSPs)
chr2 (17-87)||(38955121-38955191)
[»] chr1 (1 HSPs)
chr1 (17-87)||(22964726-22964796)
[»] chr8 (1 HSPs)
chr8 (28-92)||(38442253-38442317)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 39484297 - 39484214
Alignment:
Q  248 agctatgtgtgttgtttgtgatatgtcgatgtcaattgttgaaactttaattacattttttcttcagttgtttgttggatatgt 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484297 agctatgtgtgttgtttgtgatatgtcgatgtcaattgttgaaactttaattacattttttcttcagttgtttgttggatatgt 39484214  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 39484532 - 39484452
Alignment:
Q  13 gaacaaagctgatggtggtggtgggttgaagtgtcgtgtagaaacgcatgctaggaggaggataggtaaagaaggtcagcg 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39484532 gaacaaagctgatggtggtggtgggttgaagtgtcgtgtagaaacgcatgctaggaggaggataggtaaagaaggccagcg 39484452  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 381 - 448
Target Start/End: Complemental strand, 39484164 - 39484097
Alignment:
Q  381 aggccattaatccatgaagaacaaaggtcgaatgtcgttgttttctacagaatttccccatttggttt 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484164 aggccattaatccatgaagaacaaaggtcgaatgtcgttgttttctacagaatttccccatttggttt 39484097  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 38955191 - 38955121
Alignment:
Q  17 aaagctgatggtggtggtgggttgaagtgtcgtgtagaaacgcatgctaggaggaggataggtaaagaagg 87  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||    
T  38955191 aaagttgatggtggtggtgggttgaagtgttgtgtataaacgcaggctaggaggaggatgggtaaagaagg 38955121  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 22964726 - 22964796
Alignment:
Q  17 aaagctgatggtggtggtgggttgaagtgtcgtgtagaaacgcatgctaggaggaggataggtaaagaagg 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||    
T  22964726 aaagttgatggtggtggtgggttgaagtgttgtgtagaaacgcaggctaggaggagggtgggtaaagaagg 22964796  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 38442317 - 38442253
Alignment:
Q  28 tggtggtgggttgaagtgtcgtgtagaaacgcatgctaggaggaggataggtaaagaaggtcagc 92  Q
    ||||||||||||||||||  ||| |||| |||| | ||||||||||||||||||| |||| ||||    
T  38442317 tggtggtgggttgaagtggtgtgcagaagcgcagggtaggaggaggataggtaaaaaaggccagc 38442253  T

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