View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21361_low_4 (Length: 452)
Name: NF21361_low_4
Description: NF21361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21361_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 163 - 442
Target Start/End: Original strand, 3709256 - 3709530
Alignment:
| Q |
163 |
ttttaatatgttttcttgtatgttgtgactaacatttgattagcaatagttgaggttaatttgtatcagtgcttgagttactgcttattgtgatttgtga |
262 |
Q |
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| T |
3709256 |
ttttaatatgttttcttgtatgttgtgactaacatttgattaccaatagttgaggttaatttgtatcagtgcttgagttactgcttattgtgatttgtga |
3709355 |
T |
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| Q |
263 |
ctgggatttgcttaaaaataattgatgctattctgcatcagcatgtgagtatttttatcatattatataacacaagtttttcttaatctcagtggcagga |
362 |
Q |
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| T |
3709356 |
ccgggatttgcttaaaaataattgatgctattctgcatcagcatgtgagtatttttatcatattatataacacaagtttttcttaatctcagtggcagga |
3709455 |
T |
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| Q |
363 |
aaatcacttccggtggccggacggattgtggttgtacaatacattgatctgtaaagtgcttctaggttttgagttctgtg |
442 |
Q |
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| T |
3709456 |
aaatcacttccagtggccggacggattgtggttg-----tacattgatctgtaaagtgcttctaggttttgagttctgtg |
3709530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 163 - 358
Target Start/End: Original strand, 3718394 - 3718590
Alignment:
| Q |
163 |
ttttaatatgttttcttgtatgttgtgactaacattt-gattagcaatagttgaggttaatttgtatcagtgcttgagttactgcttattgtgatttgtg |
261 |
Q |
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| T |
3718394 |
ttttaatatgttatcctgtatgttgtgactaacattttgattagcaatggttgaggttaatttatatcagtgcttgagttactgcttattgtgatttgtg |
3718493 |
T |
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| Q |
262 |
actgggatttgcttaaaaataattgatgctattctgcatcagcatgtgagtatttttatcatattatataacacaagtttttcttaatctcagtggc |
358 |
Q |
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| T |
3718494 |
actgggatttgcttaaaaataattgatgctattctgcatcatcatgtgagtatttttatcatattaattaacataaatttttcttaattccagtggc |
3718590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 3717477 - 3717612
Alignment:
| Q |
25 |
cttacttggtcaatctctctaaggaatgcaaacggaactagcaaatcaaggagatcaaaatcagaatttcatttaactaaccaatg-----taatagtac |
119 |
Q |
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| T |
3717477 |
cttacttggttaatctgtctaagggatgcaagctgaacaagcaaattaaagagatgaaaatcagaatttcatttaacaagccaatgtaatataatagtac |
3717576 |
T |
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| Q |
120 |
aatagctggaacgatcacgatagaaaattactatag |
155 |
Q |
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| T |
3717577 |
aacagccggaacgatcacaagagaaaattaatatag |
3717612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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